Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01123 ATGAGAACAGAGTTGAAGAAGAACATATCCAAGTCTTCGTTGCCGAAATTTGATGTGAGGAAGTGGCTCAATATAAAGAGCAGTGATGACAAGTTTCATTCAGATTACTCTATAGCAGAGGGGTGGTTGATGGATGCAGCCAATGGAATGAAACATTCGGTACCAGGGAAGGGAGGACCACTTGTCACTGACACTGACTCACTCAGCCTTAGGATGTTCGTGGGGACATGGAATGTTGGAGGGAAGTCACCGAACGAGGAATTGAACTTAAGGGATTGGTTGATGTTGCCTTCACCAGCTGATTTCTATGTTATTGGGTTCCAAGAAATTATCCCTCTAAACGCAGGGAATGTCCTTGGGCCAGAGGACAGTGGCCCAGCAGCAAAGTGGCTGGCCCTTATTCATCAAGCCTTGAATTCTAGCATAGAAAGTTCTCCTCTTGAGGGTAAGAAACAATGCTATTCCCTACTAGCAAGCAAGCAAATGGTGGGTATATTCTTGTGCGTGTGGATACGAACGGATTTTTACAATCACGTTACCAATCTAAAGATGTCATGCGTTGGTAGAGGCATCATGGGCTATCTAGGAAATAAGGGTTCAATATCAATTAGTATGACATTGTACCATACCACATTCTGCTTCGTTTGTACCCACTTGGCCTCTGGAGAGAAAGAGGGTGATGAGATAAGAAGAAATTTTGATGTCTCAGAAATATTGAAGAAAACTAAATTTTCTCACTCATTTAAAGCTCTTGGTCATCCACTTCCTCCTCAAAGCATATTAGAACATGATAAGATTATTTGGCTTGGTGATTTAAATTATCGACTTTCTGCTGGTTACGATGATACTCATGAACTACTTAAGAAGAATGATTGGCAAGCACTATTAGAGAAGGATCAGCTAAGGATAGAGCAAAGAGCTGGTCGAGTATTCAAAGATTGGAAGGAAGGGAAGATATATTTTGCTCCTACTTACAAATATTTATTCAATTCTGACCAATATGTTGCCCAAACCTCCAAGGAAAAACAACGGACTCCAGCTTGGTGTGATCGAATTTTATGGAAAGGTGAAGGTCTTGAACAATTGTGGTACGTGCGAGGAGAGTCTAAATTCTCAGACCATAGACCTGTGTATTCACTATTCTCGATTCATGTGGACTTAACATGTTCATGCCCTTCTAGACCCTTGACAAATGCTACCTTGTCATCATCTTGTGCTGCTAAAGTGCAAGCAGAGGAACAGCTCTTGTTGTTAACAAGGGAAAAAAGTTGCATAGAATCTACACACTAG 1290 0.414 MRTELKKNISKSSLPKFDVRKWLNIKSSDDKFHSDYSIAEGWLMDAANGMKHSVPGKGGPLVTDTDSLSLRMFVGTWNVGGKSPNEELNLRDWLMLPSPADFYVIGFQEIIPLNAGNVLGPEDSGPAAKWLALIHQALNSSIESSPLEGKKQCYSLLASKQMVGIFLCVWIRTDFYNHVTNLKMSCVGRGIMGYLGNKGSISISMTLYHTTFCFVCTHLASGEKEGDEIRRNFDVSEILKKTKFSHSFKALGHPLPPQSILEHDKIIWLGDLNYRLSAGYDDTHELLKKNDWQALLEKDQLRIEQRAGRVFKDWKEGKIYFAPTYKYLFNSDQYVAQTSKEKQRTPAWCDRILWKGEGLEQLWYVRGESKFSDHRPVYSLFSIHVDLTCSCPSRPLTNATLSSSCAAKVQAEEQLLLLTREKSCIESTH* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01123 429 SMART i5p_5 68 390 IPR000300 GO:0016791|GO:0046856
Rops6g01123 429 FunFam Type I inositol polyphosphate 5-phosphatase 8 56 406 - -
Rops6g01123 429 Pfam Endonuclease/Exonuclease/phosphatase family 75 374 IPR005135 GO:0003824
Rops6g01123 429 Gene3D Endonuclease/exonuclease/phosphatase 62 409 IPR036691 -
Rops6g01123 429 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 19 399 IPR045849 GO:0004445
Rops6g01123 429 SUPERFAMILY DNase I-like 68 385 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01123 Rops-Chr6 25856567 25860327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01123 69 385 Acyl Lipid Metabolism Gene Families AT1G65580 30.685 5.50e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01123 - - gmx:100795297 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01123 6 25856567 25860327 Rops6g01123 6 25856567 25860327 ECH
Rops8g03218 8 70403264 70409235 Rops6g01123 6 25856567 25860327 PCT