Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03202 ATGGTGGGTGTTATTTCGTTGGTAACAGGAAGGCCTGGTCGAAGTGGGTTTGGATCAGCTTCAACTGCAGAGCAGGTTACTGAAGGAATTGATGCCAGCAACCTCACTATAATTATCACTGGAGGTGCAAGTGGTATAGGATTGGAGACAGCACGAGTGTTGGCTCTTCGAAAGGCTCATGTCATCATTGCTGTACGAAACATGGTGTCTGCAAAGAAAGCTAAACAAGAAATACTGGAGGAGGATGAGTCTGCACGAGTGGATATAATGAAGCTCGACCTATGCTCTGTGAATTCTGTCAGATCATTTGTGGAAAGCTTCATCGCTCTTGATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCCTTCAAGCTCTCACAGGATGGGATTGAGATACAGTTTGCCACAAACCATCTTGGCCATTTCCTCTTGACAAACCTTCTTCTTGACAAAATGAAACAAACTGCAAAAGACACTGGAATAGAAGGCAGGATCATAAACCTTTCATCAATTGCCCATAACTACACTTACAGAAAGGGGATCAGATTTGACAAGATCAATGATCGAAAGGGTTATTTTAACAAGAAGGCATATGGGCAGTCCAAGTTAGCCAACATATTACATGCAAATGAGCTTTCTCGTCGCTTGCAGGGAGCAGCGACCACATGCTATGTAGCTCTGCACCCAAGCATGGAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATGAATGTAAGCCAAGTTCATTTGCCTCAAAAAAACAGTTAGCAAAGAAACTCTGGGACTTCAGCAACAACTTGATCGATGCAATTTCAAAAGCTTGA 840 0.4298 MVGVISLVTGRPGRSGFGSASTAEQVTEGIDASNLTIIITGGASGIGLETARVLALRKAHVIIAVRNMVSAKKAKQEILEEDESARVDIMKLDLCSVNSVRSFVESFIALDLPLNILINNAGVMFCPFKLSQDGIEIQFATNHLGHFLLTNLLLDKMKQTAKDTGIEGRIINLSSIAHNYTYRKGIRFDKINDRKGYFNKKAYGQSKLANILHANELSRRLQGAATTCYVALHPSMEGVTGKYFVDCNECKPSSFASKKQLAKKLWDFSNNLIDAISKA* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03202 279 CDD retinol-DH_like_SDR_c_like 36 266 - -
Rops8g03202 279 PANTHER RETINOL DEHYDROGENASE 222 273 - -
Rops8g03202 279 Gene3D - 25 276 - -
Rops8g03202 279 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Rops8g03202 279 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Rops8g03202 279 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Rops8g03202 279 Pfam short chain dehydrogenase 36 182 IPR002347 -
Rops8g03202 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Rops8g03202 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Rops8g03202 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Rops8g03202 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 252 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03202 Rops-Chr8 70250486 70254673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03202 17 177 Acyl Lipid Metabolism Gene Families AT3G46170 25.301 5.61e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03202 K11153 - gmx:100801849 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03202 8 70250486 70254673 Rops8g03202 8 70250486 70254673 ECH
Rops8g03202 8 70250486 70254673 Rops6g01138 6 26016448 26020463 PCT