Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01138 ATGGTGGGTATCTTCTCGTTGGTAACAGGGAGACCGGGACCAAGTGGATTCGGATCTGCCACAACTGCAGAACAGGTTACTGAAGGAATTGATGCTAGCAATCTCACTGCAATCATCACAGGGGGAGCAAGTGGTATTGGCTTGGAGACAGCACGAGTCCTGACTCTTCGAAACGCCCATGTCATTATTGCTGTGAGAAACATGGATTCTGCAAAGGAAGCTAAAAAACTAATTCTACAGGACAATGAGTCAGCTCGAGTTGACATTATGAAACTCGACCTTTGCTCAGTGAAGTCTGTTAGATCATTTGTTGACAACTTCCTCGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCCTTCCAGTTGTCAGAAGATGGGATAGAAATGCAGTTTGCAACAAATCATCTTGGTCATTTCCTTTTGACAAACCTTCTTCTTGACAAGATGAAACAAACTGCAAAAACCACTGGAATTGAGGGTAGGATCATAAATCTGTCATCAGTTGCTCACACCTACACTTATGAAGAGGGCATTCGATTTGATGGCATCAATGATCCTATTGGTTACTCTGACAAGAGGGCTTATGGGCAATCCAAGTTAGCCAACATATTGCACGCAAATGAGCTTTCTCGTCGCTTGAAGGAAGAGGGTGTCAACATCACAGCCAACTCAGTCCACCCTGGAGTGATAATGACTCCTCTCATGAGACACTCTTCTTTACTTATGAACTTTCTGAAGATGTTCACCTTTTACATATGGAAGAACGTCCCACAGGGAGCTGCCACAACATGCTTTGTGGCTCTGCACCCAAGCTTGAAAGGTGTAACCGGGAAGTACTTTCTGGATTGTAATGAGTTTCAACCAAGTGCACATGCGTCAAATGAACTCTTAGGAAGGAAACTTTGGGATTTTAGCAACAAGTTAATCAATTCAATCTCAAAAGCTTGA 972 0.4331 MVGIFSLVTGRPGPSGFGSATTAEQVTEGIDASNLTAIITGGASGIGLETARVLTLRNAHVIIAVRNMDSAKEAKKLILQDNESARVDIMKLDLCSVKSVRSFVDNFLALDLPLNILINNAGVMFCPFQLSEDGIEMQFATNHLGHFLLTNLLLDKMKQTAKTTGIEGRIINLSSVAHTYTYEEGIRFDGINDPIGYSDKRAYGQSKLANILHANELSRRLKEEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFYIWKNVPQGAATTCFVALHPSLKGVTGKYFLDCNEFQPSAHASNELLGRKLWDFSNKLINSISKA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01138 323 Gene3D - 24 320 - -
Rops6g01138 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Rops6g01138 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Rops6g01138 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Rops6g01138 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Rops6g01138 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Rops6g01138 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Rops6g01138 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Rops6g01138 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Rops6g01138 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Rops6g01138 323 PANTHER RETINOL DEHYDROGENASE 14 317 - -
Rops6g01138 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01138 Rops-Chr6 26016448 26020463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01138 35 244 Miscellaneous Gene Families AT2G29340 27.230 7.20e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01138 - K11153 gmx:100807056 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01138 6 26016448 26020463 Rops6g01138 6 26016448 26020463 ECH
Rops8g03202 8 70250486 70254673 Rops6g01138 6 26016448 26020463 PCT