Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03175 ATGGCATGCATGTCGAAACCGCTCGGCATATCCAATGGCAGTGTCTTCCACTCTCTTCCTTCATCCTCTTCTCCTTGCCTCTTTCAATTTCGGCGCTGCTTCCATTCTAATTCAATGAGGTTCCGCCGCACAAATATCAAAATGTCCTCCTCCGACTCCCTTCCTCCTCTTCCTGAAAACCGCCTCATCGTTGGGCTTGGAATGACGACGGTGGATTTCTTGGCTACTGTTGATGGATATCCCAAACCCGATGACAAGGTCCGAACCACCTCTTTCAAGGTTCAAGGTGGTGGCAATGCTGGTAATGCTTTAACCTGTGCTGCTCGTCTCGGCTTGAAACCCAAGCTCATCTCCAAGGTTGGAGATGATGCCCAAGGAAGGAGCATATTGAAGGAGCTAGAAGCTGATGGTGTCGATACTTCCTTCATCGTCGTATCCAAGGGTGGCAGTTCAACATTTTCATATGTACTAGTAGACAGTCAAATAAAAACACGCACAAGTATTTACACCCCTGGAGATCCTCCCTTGATGCCAGATGACCTGTCCCAGTCAATGTTATTATCTGCATTTGATGAATCAAGATTAGTCTATTTTGATGGAATGTCTACCAAAACTGCTCTATTTGTTGCACAAGAGGCAGCTCGCAATACTATTCCAATTTTAGTTGAGGCAGAATCACCGAGGGAAGGGTTGGATGAGCTTCTGAAGCTTGCTGATTTTGCTGTATGCTCAGCAAGGTTTCCCCAGGCGTGGACACAGGCACCATCCATCCCAAGTGCACTGGTTTCCATGCTTTTGAGATTGCCAAATATCAACTTTGTGATTGTGACTTTGGGTAAAGATGGTTGTCTAATGTTGGAAAGAAGTCCAAACGAGGATGCTGACATAGAAGAAAGGGATGTAGAGAGTGTCTTAGAATCCTTATACAAAGGGAAAGATGATAGCTTGGCTATCCCAACCTGTATATCATCGGTGGTGACAAAATTCAGAGCAAATGGAATAGGGACAATTTGTGGGAGATTCTTTATTGGAACAGCAGAGAAGATACCAGATTCTGAGCTGATCGATACAACTGGTGCTGGGGATGCATTTATTGGAGCCATTATGTATGCTATCTGTGCAAACATGGTACCAGAGAAAATGTTGCCATTTGCTGCTCAAGTGGCAGCTGCCAAGTGTAGAGCATTGGGAGCTCGAACTGGTCTTCCACATCGTACGGATCCACGCTTGGCATCCTTTTTGTGCTAG 1248 0.4567 MACMSKPLGISNGSVFHSLPSSSSPCLFQFRRCFHSNSMRFRRTNIKMSSSDSLPPLPENRLIVGLGMTTVDFLATVDGYPKPDDKVRTTSFKVQGGGNAGNALTCAARLGLKPKLISKVGDDAQGRSILKELEADGVDTSFIVVSKGGSSTFSYVLVDSQIKTRTSIYTPGDPPLMPDDLSQSMLLSAFDESRLVYFDGMSTKTALFVAQEAARNTIPILVEAESPREGLDELLKLADFAVCSARFPQAWTQAPSIPSALVSMLLRLPNINFVIVTLGKDGCLMLERSPNEDADIEERDVESVLESLYKGKDDSLAIPTCISSVVTKFRANGIGTICGRFFIGTAEKIPDSELIDTTGAGDAFIGAIMYAICANMVPEKMLPFAAQVAAAKCRALGARTGLPHRTDPRLASFLC* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03175 415 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 356 369 IPR002173 GO:0016301
Rops8g03175 415 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 47 414 - -
Rops8g03175 415 CDD ribokinase_group_B 63 404 - -
Rops8g03175 415 SUPERFAMILY Ribokinase-like 63 407 IPR029056 -
Rops8g03175 415 Pfam pfkB family carbohydrate kinase 62 288 IPR011611 -
Rops8g03175 415 Pfam pfkB family carbohydrate kinase 347 404 IPR011611 -
Rops8g03175 415 PRINTS Ribokinase signature 65 86 IPR002139 GO:0016301
Rops8g03175 415 PRINTS Ribokinase signature 274 285 IPR002139 GO:0016301
Rops8g03175 415 PRINTS Ribokinase signature 92 111 IPR002139 GO:0016301
Rops8g03175 415 Gene3D - 62 400 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03175 Rops-Chr8 69805295 69816427 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03175 - - gmx:100792838 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03175 8 69805295 69816427 Rops8g03175 8 69805295 69816427 ECH
Rops8g03175 8 69805295 69816427 Rops6g01165 6 26425265 26431685 PCT