Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03088 ATGTTTAGCAGACCAACTGGTACCAGTGCTTTTAGCATATTCAAATGGAAACAGAAAGGTGCTTCATCTCTGACAACAGGTTTACTTCATGATGTTCCGCCAGAGATTGAATTGTCTGATTATGGAAAGATCCCAAGTCCAGGAAGTGAGAGCCCTTCAGGGCTTCTTAATGGCGAAAGCCTGAATCTAGAACCAATTGCTGATTTGGATCTCTTCTTTGAAAGACTTTACAGCTACTACTGTGAGAAAGGGCTACGGTGCATCATTATAAAGTGGATTGTTGAACTTCTAAGTCTGGGGTTCACCATATGTTTTTCAGGATTTTTTTTACTATATGTTGATTGGAATGGGCTCCGTAATGCAAAGTGTGGGATGGATGCAGTTGAATCTGGAATTAAGCCCTGTGATCTTGCTAAAGAAGCTCTTAATCAACACCCTCTAACCCCACTAACACTTACCAAAGCTATTATGGTTGGATACTTGGGAATATTTTCCGTCTGTTGGATATTTTGCTTCTTGAGATTCTTGGCTCAACTAAAGGATATTCTGGAAATCCGACAGTTTTACTACAACAGTCTCCATGTTACTGACAATGAAATTCAAACCATGCCCTGGGCTACAATTCTTGACAAAGTTGTTTTAGTACAAAGTACTCGACAACTATGTGTGGTAAAGGATCTTTCTGCCCATGACATAGTGATGAGATTGATGCGGAAGGAGAACTACTTAATTGGAATGCTCAACAAGGGTGTGCTTGCTTTACCCATTTCACAGTGGGTTCCAGGTGCTGGTCCTACAGTGAAATATAGTCCTAGTGGAACACAATATTGTTTAATACTTACCAAGACCCTTGAATGGACTTTGAATTGGTGCATCCTGCAGAGCATGTTTGATCGAAACTTTTGCGTCAGAAGGGATTTTGTGTCAAATCCAAAGACATTACAGAAAAGGCTCAAGGTAGTTGGGCTTGCAATGCTTTTACTTTCTCCCTTTCTTGTCATATTCATGCTGGTATACCTCTTTCTGAGGCATGCTGAACAATTTTATAATCACCCAAGAACAGCGTCATCTCGAAGATGGTCAAATTTGTCAAGGTGGATCTTTAGGGAATTCAATGAGGTTGACCATCTCTTCAAGCATCGGATTAATAACAGTGTCTTGCATGCTTCTGATTATCTCAAGCAATTTCCTTCACCTATCATATCTATCATTGCAAAATTCATCTCTTTTGTATCGGGTGGCTTTGCTGCAATTCTGATCATCTTTGCTTTTCTCGAGGAGTCTCTGCTAGAGGGCCATATATTTGGTCGGAACTTGTTTTGGTATGCTGCTGTTTTTGGAACTATAACTGCCATTAGCCGGGCTGCCATTGCAGATGAGCTTCTGGTCTCAGACCCTAAAGGAGCAATATCTATGGTGGTTCAGCATACACATTACATGCCAAAGAGATGGCGTGGCAAAGAAAGTACTGAAAGGGTCCGCATTGAGTTTGAAACCTTATTCCAGTATACTGGAATGATGTTACTTGAGGAGATGGCCTCAATTTTTCTCACTCCATATTTACTCCTGTTTATTGTCCCAAAGCGAGCTGATGACATCTTGCAGTTCATTGCTGATTTCACTGTAAATGTGGAAGGTGTAGGGCATGTTTGCAGTTTTAGCACCTTCAATTTTCAAGAGCATGGAAACAGTCATTATGGTTCCCCATATGATGCACCTCGTAGCCAGAGGAGTTCCCAGGGGAAGATGGAGAAATCATTGTTGAGCTTTCAGAGTAGTTACCCCTCATGGGAACCGAATGCTCAGGGGAAGCAGTTTTTGCTAAATCTTAGAACATTCAGAGAGCAAAAGTTATCAGTACATGGAAACATACATACATCTTCCCCTCCTAGAATGTGGAGGGGTAGTCCCAGTATGGGAAGCAATGGAGACAGAAACAGGTTTATATCCAGGGAAATGCCATACAGTACTTTGGTAACTGGCAATCACCCAGGTTCATTGTGGTTGACTGAAGCCAACCAAAACAATCATCCCTATCTTCTTGATTGGTACTATACATCTCAACCTCATGAGGTGACTTTGAGAGATGTTCCACCAGAGCCGTTTGGAGTAGTAATAGAGCATCAATCCAGAGATTATCGGATCCCCTCCAACTTGACACAGAATGAATCTGGGTATGAAGAATACTCAGATGAGTGTCATGAGGATCGGGCTGCATCTCATCTCGGGGCTTCCACGTCAGCTCCCGTATTCAGGGAAAGCCTAATTCATGATCAAAATTATAATGAACTATCCCACCCTATCAGGAGTCATTGGTGGGCTAGAAGTCGCCCACCGGGTGGACAGACTCAGACAAGCTTTTTTGAGCCTCCAGATTTCAATCATCACACAGCATATGATTGTTATGATAAGTTTTCTGATAGAGGGTCAGAGGGTCAAGATCAAGAACAACACTTTTACTGGAGAGATTATCATAGATTATCTAGAACAACATGCACAGATGACTTAGAAGCGGGAGAACTTAATCTTCATTTTGATATTTATAGCAGAGCTCCAGAAACTCCCACCACTGTAAATCCCAGCACTGCAAGCTTTTGA 2598 0.4184 MFSRPTGTSAFSIFKWKQKGASSLTTGLLHDVPPEIELSDYGKIPSPGSESPSGLLNGESLNLEPIADLDLFFERLYSYYCEKGLRCIIIKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMDAVESGIKPCDLAKEALNQHPLTPLTLTKAIMVGYLGIFSVCWIFCFLRFLAQLKDILEIRQFYYNSLHVTDNEIQTMPWATILDKVVLVQSTRQLCVVKDLSAHDIVMRLMRKENYLIGMLNKGVLALPISQWVPGAGPTVKYSPSGTQYCLILTKTLEWTLNWCILQSMFDRNFCVRRDFVSNPKTLQKRLKVVGLAMLLLSPFLVIFMLVYLFLRHAEQFYNHPRTASSRRWSNLSRWIFREFNEVDHLFKHRINNSVLHASDYLKQFPSPIISIIAKFISFVSGGFAAILIIFAFLEESLLEGHIFGRNLFWYAAVFGTITAISRAAIADELLVSDPKGAISMVVQHTHYMPKRWRGKESTERVRIEFETLFQYTGMMLLEEMASIFLTPYLLLFIVPKRADDILQFIADFTVNVEGVGHVCSFSTFNFQEHGNSHYGSPYDAPRSQRSSQGKMEKSLLSFQSSYPSWEPNAQGKQFLLNLRTFREQKLSVHGNIHTSSPPRMWRGSPSMGSNGDRNRFISREMPYSTLVTGNHPGSLWLTEANQNNHPYLLDWYYTSQPHEVTLRDVPPEPFGVVIEHQSRDYRIPSNLTQNESGYEEYSDECHEDRAASHLGASTSAPVFRESLIHDQNYNELSHPIRSHWWARSRPPGGQTQTSFFEPPDFNHHTAYDCYDKFSDRGSEGQDQEQHFYWRDYHRLSRTTCTDDLEAGELNLHFDIYSRAPETPTTVNPSTASF* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03088 865 PANTHER APG9 AUTOPHAGY 9 2 811 IPR007241 GO:0006914
Rops8g03088 865 Pfam Autophagy protein ATG9 64 557 IPR007241 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03088 Rops-Chr8 68633482 68642271 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03088 K17907 - gmx:100777405 1444.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03088 8 68633482 68642271 Rops8g03088 8 68633482 68642271 ECH
Rops8g03088 8 68633482 68642271 Rops6g01250 6 27614964 27621380 PCT