Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03071 ATGGCTGGGGAAGATTTTGATGGACATGATATAGGTTATGTACCTGAGGACCCCAATTTTCCACCAAATATTTCTGATGAATATGATGTTGGAACTGTGATTGATAGCTCTGGGTTTCCTCCAGTGCTGCCTGATGAACATGGTGCTGGAAATTTGGTGGAGGATGCCAATTTTACTGAAAATCATTTTGATGGACATGAACATGATGTTGGGGGTTTGCCTGGAGGAGACACTGATTATCCGCAGCAAGAGCATATTGAGGAAGATCACCATGGTGTAGGAGATGTGACCGAGAGTTTCAATTCTCTGCAAAAACAGGGATCCGAGATTGATTCCAAAGGAAATCAAATAACAAGGTGGCCAGGGTGGCCTGGAGAGAATGTTTTCAGGATGCTGGTTCCAGCGCAAAAGGTTGGCGGTATTATTGGCCGAAAGGGCGAGTTTATTAAGAAAATTATAGAGGAGACTAAGGCGCGAATTAAAATTCTTGATGGTCCACCTGGAACCCCAGAAAAAGCTGTGAGTTCGTTTTCAAATTTCCCTGTTGAAATAGTTTGTGCAGACTTTGATGGCAAGAAGCTTTCACTGTACCTGGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGCCCCATACCACCTGCTGTTGATGGTTTGTTAAGGGTTCATAAACAAGTTATCAGCGTTGACCGTGACCCTGCAGATAGCACATTGGGTGCTGGACGCTCAGTTGTTACTAGGCTTCTAGTGGCAGATATGCAAGCAAGAAGCTTGATTGGGAAGCAGGGTTCAACCATAAAATCCATTCAAGATTCCTCTGGTTGCACCATACGCATTCTTAGATCAGAAAACCTGCCAGTTTTTGCTTTACGAGATGATAGTGTTGTTGAAATACAAGGGGAATCTGCCGGGGTTCACAAGGCAGTTGAACTTATTGCAATTCATTTACGTAAGTTCTTGGTTGATCGCAGCATAGTTGGAGTTTTTGAAATGCAAATGCAAATGCCAGATGTTCGAGTCAACCAGAATGTGCCACCACAACAAACTTGGGTTCCTCCTCCTCAAGGGTTTTCAGCCCCAAGTGGTGGTGGTGGACCTGCTTTTGCACCCAATCACCAATATATGCCTCCTTCACATCACCATGATAATTATTACCCACCTGCTGACCTGCCTCCCGTGAACAACCTCCTTCATCAGGGTCCACCACCTGCCTATGAAAGGGAAGCTTATATGGGAATTCATTCATCAAGCATGCAACCGCCACAATCTGTCATAACTAAGGTCATACAGCACATGCAAATTCCTCTTTCTTATGCGGATGCTGTTATTGGAGCATCAGGCACAAATATCAGCTACATTCGTCGAGCTAGTGGAGCAAGTGTCACAATTCAGGAGACAAAGGATGTGCCGGGGGAGATGACTGTCGAGATAAGTGGGACTTCTTCTCAAATACAGGCTGCTCAACAGCTGGTTCAGGATTTCATGGCTGGAGCTGCAAGTGCGACACAGGATCAAATGGGGGGATCAGTTAGCCAAGGTTACAATGCCTATACAACTAATGCTCCTGTTTATGCATCTCCATCCTCTGGCGCTGGTGGCCATACAGGTCATGCGCCTTCTGCAGATTATGGTTCCGTATATGGTACCAATTATGGCTATTAA 1659 0.4521 MAGEDFDGHDIGYVPEDPNFPPNISDEYDVGTVIDSSGFPPVLPDEHGAGNLVEDANFTENHFDGHEHDVGGLPGGDTDYPQQEHIEEDHHGVGDVTESFNSLQKQGSEIDSKGNQITRWPGWPGENVFRMLVPAQKVGGIIGRKGEFIKKIIEETKARIKILDGPPGTPEKAVSSFSNFPVEIVCADFDGKKLSLYLVMVSAKEEPDRPIPPAVDGLLRVHKQVISVDRDPADSTLGAGRSVVTRLLVADMQARSLIGKQGSTIKSIQDSSGCTIRILRSENLPVFALRDDSVVEIQGESAGVHKAVELIAIHLRKFLVDRSIVGVFEMQMQMPDVRVNQNVPPQQTWVPPPQGFSAPSGGGGPAFAPNHQYMPPSHHHDNYYPPADLPPVNNLLHQGPPPAYEREAYMGIHSSSMQPPQSVITKVIQHMQIPLSYADAVIGASGTNISYIRRASGASVTIQETKDVPGEMTVEISGTSSQIQAAQQLVQDFMAGAASATQDQMGGSVSQGYNAYTTNAPVYASPSSGAGGHTGHAPSADYGSVYGTNYGY* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03071 552 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 416 496 IPR036612 GO:0003723
Rops8g03071 552 Gene3D K Homology domain, type 1 414 501 IPR036612 GO:0003723
Rops8g03071 552 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 120 174 IPR036612 GO:0003723
Rops8g03071 552 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 234 325 IPR036612 GO:0003723
Rops8g03071 552 SMART kh_6 425 495 IPR004087 GO:0003676
Rops8g03071 552 SMART kh_6 125 204 IPR004087 GO:0003676
Rops8g03071 552 SMART kh_6 241 316 IPR004087 GO:0003676
Rops8g03071 552 Pfam KH domain 429 492 IPR004088 GO:0003723
Rops8g03071 552 Pfam KH domain 245 311 IPR004088 GO:0003723
Rops8g03071 552 Pfam KH domain 129 171 IPR004088 GO:0003723
Rops8g03071 552 CDD KH-I_PEPPER_rpt1_like 126 219 - -
Rops8g03071 552 MobiDBLite consensus disorder prediction 1 21 - -
Rops8g03071 552 ProSiteProfiles Type-1 KH domain profile. 426 490 - -
Rops8g03071 552 Gene3D K Homology domain, type 1 239 317 IPR036612 GO:0003723
Rops8g03071 552 CDD KH-I_PEPPER_like_rpt3 426 494 - -
Rops8g03071 552 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 120 512 - -
Rops8g03071 552 CDD KH-I_PEPPER_rpt2_like 244 316 - -
Rops8g03071 552 ProSiteProfiles Type-1 KH domain profile. 242 311 - -
Rops8g03071 552 ProSiteProfiles Type-1 KH domain profile. 126 162 - -
Rops8g03071 552 Gene3D K Homology domain, type 1 122 184 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03071 Rops-Chr8 68136407 68150757 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03071 K21444 - gmx:100813235 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03071 8 68136407 68150757 Rops6g01277 6 27951878 27957816 PCT