Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01277 ATGTCTGGGGAACATTTTGATGGACAAGAACAAGATGCAGGCTATGTGCCTGAGAACCCCGAATTTCCGCAAAACCATTTGGATGAACATGATGGAGGAAATGTGATAGATGACTCTGGGTTTCCTCAACTGCAGCCTGATGAACATGACGTGGGCAATTTGCCTGAGGATGCCAATCCTCCTGAAAATAAATTTGATGATCAAGATGTTGAAGATTTACCTGGACAAACTGATTCATCTCCGCAAGAGCATACTGAGGAACAACATGATGGAGGAGGTATGAATGAGAATTTGGGCTCTCTAGAAGAAAAACAGGGATCAGAGGAAGATTTGAAAGGAAGTGAAATTAAGAAGTGGCCAGGGTGGCCTGGAGAGAACGTTTTCAGGATGTTGGTTCCTGTGCAAAAGGTTGGCAGTATTATTGGCCGCAAAGGCGAGTTTATTAAGAAAATTACAGAGGAGACTAAGGCTCGTATTAAAATTCTCGATGGTCCACCTGGAACTGCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCGGATCGCCCCATACCACCTGCTGTGGAGGGTTTGTTAAGGGTTCATAAACAAGTTGTTAATGTGGACCGTGATCCTGCAGATACTGCATCAGGTGCAGGACGCCCAGTTGTTACAAAGCTTCTTGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGGTCCACTATAAAATCTTTTCAAGATGCCACAGGTTGCAATATACGCGTTCTTGGTTCAGAACACCTGCCTGTTTTTGCTCTTCGAGATGATAGTGTTGTTGAGATACAAGGGGAATCCGCTGGGGTTCACAAGGCAGTTGAACTTATTGCAATTCATCTGCGAAAGTTCTTGGTTGACCGCAGCATAGTCGGAGTATTTGAAACACAGATGCAGAGGCCAGATGTTCGAGTTAACCAGAATGTGCCACCACACCAACCTTGGGGTCCTCCTCCTCCTCAAGGGTTTCCAGCTCCTGGCAGTGGTGGTGGACCTGCTTTTCCACCCAATCCTCAATATATGCCTCCTTCACATAACTATGATAATTACTACCCACCTGCTGACCTGCCTCCAATGGACAAGCACCTTCATCAGGGTCCACCACCTGCCTATGCCAGGGATGCTCCTATCGGAATTCATTCATCCAATGCACCGTCTCAACAATCTGTAGTGACTAAGGTCACACAACACATGCAAATTCCTCTGTCCTATGCAGATGCTGTTATTGGAGCATCCGGAGCAAATATTAGCTACATCCGTCGTGCTAGTGGAGCAAGTATTACAATTCAAGAGACCAGGGGTGTGCCAGGGGAGATGACTGTTGAGATAAGTGGTACTGCTTCCCAAATACAGGCGGCCCAACAGCTGGTGCAGAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGATCAATTAACCAAGGTTACAATTCTTATCCTTCTAATGCTCCTGTTTATGCATCTCCGCCATCAAGCGCTGGTGGTCATGCAGGCCATGCGCCTGCTGCAGATTATGGTCCAGTATATGGCACCAATTATGGCTATTGA 1584 0.4678 MSGEHFDGQEQDAGYVPENPEFPQNHLDEHDGGNVIDDSGFPQLQPDEHDVGNLPEDANPPENKFDDQDVEDLPGQTDSSPQEHTEEQHDGGGMNENLGSLEEKQGSEEDLKGSEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPDRPIPPAVEGLLRVHKQVVNVDRDPADTASGAGRPVVTKLLVADTQAGSLIGKQGSTIKSFQDATGCNIRVLGSEHLPVFALRDDSVVEIQGESAGVHKAVELIAIHLRKFLVDRSIVGVFETQMQRPDVRVNQNVPPHQPWGPPPPQGFPAPGSGGGPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPPPAYARDAPIGIHSSNAPSQQSVVTKVTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASAAQDHMGGSINQGYNSYPSNAPVYASPPSSAGGHAGHAPAADYGPVYGTNYGY* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01277 527 CDD KH-I_PEPPER_like_rpt3 401 469 - -
Rops6g01277 527 CDD KH-I_PEPPER_rpt1_like 125 193 - -
Rops6g01277 527 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 117 493 - -
Rops6g01277 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 117 180 IPR036612 GO:0003723
Rops6g01277 527 MobiDBLite consensus disorder prediction 1 118 - -
Rops6g01277 527 MobiDBLite consensus disorder prediction 319 350 - -
Rops6g01277 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 207 298 IPR036612 GO:0003723
Rops6g01277 527 Gene3D K Homology domain, type 1 389 477 IPR036612 GO:0003723
Rops6g01277 527 Coils Coil 458 478 - -
Rops6g01277 527 CDD KH-I_PEPPER_rpt2_like 218 290 - -
Rops6g01277 527 SMART kh_6 124 197 IPR004087 GO:0003676
Rops6g01277 527 SMART kh_6 400 470 IPR004087 GO:0003676
Rops6g01277 527 SMART kh_6 215 290 IPR004087 GO:0003676
Rops6g01277 527 MobiDBLite consensus disorder prediction 319 352 - -
Rops6g01277 527 MobiDBLite consensus disorder prediction 50 71 - -
Rops6g01277 527 MobiDBLite consensus disorder prediction 102 116 - -
Rops6g01277 527 Gene3D - 125 294 - -
Rops6g01277 527 ProSiteProfiles Type-1 KH domain profile. 401 465 - -
Rops6g01277 527 ProSiteProfiles Type-1 KH domain profile. 216 285 - -
Rops6g01277 527 ProSiteProfiles Type-1 KH domain profile. 125 192 - -
Rops6g01277 527 Pfam KH domain 403 466 IPR004088 GO:0003723
Rops6g01277 527 Pfam KH domain 128 180 IPR004088 GO:0003723
Rops6g01277 527 Pfam KH domain 219 285 IPR004088 GO:0003723
Rops6g01277 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 391 472 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01277 Rops-Chr6 27951878 27957816 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01277 K21444 - gmx:100818363 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03071 8 68136407 68150757 Rops6g01277 6 27951878 27957816 PCT