Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03029 ATGAAAGATGAGAACTCGAAGAAAAGCAAGCTTTCGTGGCCAAAAACATTGGTCAAGAAGTGGTTCAATATCAAGAGCAAAACCGAGGACTTTCAGGCAGATGATGTCCTTTGTGGAGGTGTTGATGAAGAGTGTAGTAGCAACTACTCAGAGAGGGAGGCATGCACTCTCAAGAAAAGCAAAACAGAGAGATCAAGCAGAGGGTACTCAGACAGAATGCAAAGAGGTAAGAATGATCTTGATGAAGCTCAGGTTACAGATGTGTATAATTATAGAATCTTTGTTGCCACTTGGAATGTAGCAGGGAAGTCACCTCCAAGTTATTTGAGTCTTGAAGATTGGCTTCACACCTCTCCACCTGCTGATATCTATGTTCTTGGGTTTCAAGAAATTGTACCTCTTAATGCTGGTAACGTTTTGGGAACAGAAGACAATGGTCCTGCAAGAAAATGGCTAGCCCTTATAAGGAAGACCCTGAATAGCCTTCCTGGAACAAGTGGTGGATGCCAAACTCCTTCTCCAATCCCTGCTCCTATTGTAGAGTTAGATGCTGATTTTGAGGGATCAATGAGACAGAAGGCAACCACTTTCTTCCACCGGAGGTCCTTCCAATCCTTGAGTCGTAGTATGAGAATGGATAATGACATGTCAGTACCACAAGCTTGCCTTGATCGCCGTCTCAGTGTCTGTGATAGAATGATATTTGATCACAGGATGAGTGACTATGATCCCAATTATAGATGGGGTTCTTCAGATGATGAAAATGGAACAGTTGACTCCCCAATTACAACACATTATTCACCAATGTCATATAGTGGTTGTCACTCTATGGAGGACAGTGATAGACAGACAGGACACTCAAGATACTGCTTGGTTGCTAGTAAGCAAATGGTTGGGATATTTCTAACAGTTTGGGTGAAAAGTGATATCAGAGATTATGTTCACAACATGAAAGTTACTTGTGTTGGTAGAGGGTTGATGGGATATCTTGGAAACAAGGGATCAATATCAATTAGTATGTCATTGCACCAAACAAGCTTTTGCTTTGTCTGTAGTCATTTGACTTCTGGACAAAAGGATGGTGATGAGCTAAGGAGAAATTCAGATGTAATGGAGATTCTCAGAAAAACAAGGTTTCCCCAGGTCCATGACATGGGCGATGAGAATTCTCCTCAGACAATTCTGGAACATGATCGAATAATTTGGCTGGGGGATTTAAATTATCGGATAGCCCTTTCTTACCGTGCAGCAAAAGCTCTTGTTGAGATGCATGATTGGAAGACTTTGTTACAGAATGATCAGCTGCGTATAGAGAAGAGGCAAGGTCGAGTATTTGTAGGATGGAATGAAGGGAAAATATATTTTCCTCCCACATATAAGTATTCAAACAATTCAGACAGATATGCAGGTGATGACAGACACTCTAAACAAAAGAGAAGAACTCCAGCATGGTGTGATCGTATCTTGTGGTATGGAAGAGGCCTCCACCAATTATCTTATGTTCGTGGGGAGTCAAGATTCTCTGATCATAGGCCAGTTTATAGCATATTCTTGGCAGACGTTGAGAGTATTGCACATAATAACCAAATGAAAAAAAGCTCCAGTTGCTCCAGTTCCAGGATTGAAGTAGAAGAGTTGTTGCCTCATTCACATGGTTATGGCTACACTGATTTGAATTTCTTTTGA 1686 0.4128 MKDENSKKSKLSWPKTLVKKWFNIKSKTEDFQADDVLCGGVDEECSSNYSEREACTLKKSKTERSSRGYSDRMQRGKNDLDEAQVTDVYNYRIFVATWNVAGKSPPSYLSLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRKTLNSLPGTSGGCQTPSPIPAPIVELDADFEGSMRQKATTFFHRRSFQSLSRSMRMDNDMSVPQACLDRRLSVCDRMIFDHRMSDYDPNYRWGSSDDENGTVDSPITTHYSPMSYSGCHSMEDSDRQTGHSRYCLVASKQMVGIFLTVWVKSDIRDYVHNMKVTCVGRGLMGYLGNKGSISISMSLHQTSFCFVCSHLTSGQKDGDELRRNSDVMEILRKTRFPQVHDMGDENSPQTILEHDRIIWLGDLNYRIALSYRAAKALVEMHDWKTLLQNDQLRIEKRQGRVFVGWNEGKIYFPPTYKYSNNSDRYAGDDRHSKQKRRTPAWCDRILWYGRGLHQLSYVRGESRFSDHRPVYSIFLADVESIAHNNQMKKSSSCSSSRIEVEELLPHSHGYGYTDLNFF* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03029 561 SUPERFAMILY DNase I-like 81 531 IPR036691 -
Rops8g03029 561 FunFam Type IV inositol polyphosphate 5-phosphatase 7 259 546 - -
Rops8g03029 561 FunFam type I inositol polyphosphate 5-phosphatase 4 isoform X1 71 183 - -
Rops8g03029 561 Pfam Endonuclease/Exonuclease/phosphatase family 96 510 IPR005135 GO:0003824
Rops8g03029 561 SMART i5p_5 225 525 IPR000300 GO:0016791|GO:0046856
Rops8g03029 561 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 18 538 IPR045849 GO:0004445
Rops8g03029 561 Gene3D Endonuclease/exonuclease/phosphatase 68 547 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03029 Rops-Chr8 67329100 67333791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03029 292 490 Acyl Lipid Metabolism Gene Families AT2G43900 30.942 1.73e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03029 - - gmx:100803074 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03029 8 67329100 67333791 Rops8g03029 8 67329100 67333791 ECH
Rops8g03029 8 67329100 67333791 Rops6g01333 6 28798449 28803114 PCT