Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01333 ATGAGAGATGAGAACTCGATGAAAAGCAAGCTTTCATGGCCCAAAACGTTGGTCAAGAAGTGGTTCAATATCAAGAGTAAAGCTGAGGACTTTCAAGCAGATGATGTCCTTTACGGAGGTGTCGACGAAGAGTGGAGGAGCAACTCTTCACAGAGGGAGGAATGCACTATCAAGAAAAGCAAAACAGAGAGAGCAAAGAGAAGGCACCCAGACAGAATGCGGCGAGGTAAGATTGACCTTGATGCAGCTCAGGTTACAGATGTGCATAACTATAGAATCTTCGTTGCCACTTGGAATGTAGCTGGAAAATCTCCTCCAAGTTATTTGAGTCTGGAAGATTGGCTTCACACCTCTCCACCTGCTGATATCTATGTCCTTGGGTTTCAAGAAATTGTACCTCTCAATGCTGGTAATGTTTTGGGGACAGAAGACAATGGCCCTGCCAGAAAATGGCTAGCTCTTATTAGGAAGACCCTAAACAGTCTTCCTGGAACAAGTGGTGAATGCCACACTACTTCACCACTCCCTGATCCTATTGTGGAGTTAGATGATGATTTTGAGGGATCAATGAGACAGAAGGCGACCTCTTTTTTCCATCGCAGGTCATTCCAATCCTTCAGTCATAGTATGAGAATGGACAATGACATGTCACTGCCACAAGCATGCCTTGATCGCCGTCTCAGTGTCTGTGATAGAATGATATTTGATCACAGGACAAGTGACTATGACCCCAATTATAGATGGCCTTCCTCAGATGATGAAAACGGTGACTCCCCAGTTATAACACAATATTCACCAATGTCATATAGAGGTTGTTTCTCTATGGAGGACAGAGATAGACCGACAGAGCACTCAAGATATTGTTTGGTTGCTAGTAAGCAAATGGTTGGGATATTTCTAACAGTTTGGGTGAGAAGTAGTATAAGAGATGATGTTCACAACATGAAAGTGTCTTGTGTTGGCAGAGGGTTGATGGGATATCTTGGAAACAAGGGTTCAATATCAATTAGCATGTCTTTGCACAAAACAAGCTTTTGCTTCATCTGTAGTCATTTAACTTCTGGACAAAAGGAGGGTGATGAGCTAAGAAGAAATTCAGATGTAATGGAGATTCTCAGAAAGACAAGGTTCCCCCGGGTTCAAGGCATGGGTGATGAAAGTTCTCCTCAGACTATTCTGGAACATGATCGAATAATTTGGCTGGGGGATTTAAATTATCGGATAGCCCTTTCTTACCGTGCAGCAAAAGCTCTTGTTGAGATGCATAATTGGAAGGTTTTGTTAGAGAATGACCAGCTGCATATAGAGCAAGGAGAAGGTCGTGTCTTTGAAGGATGGAATGAGGGTAAAATATATTTCCCTCCCACATACAAGTATTCAAACAATTCAGACAGATATGCAGGCGATGAAAGACGCTCAAAACAAAAGAGAAGAACTCCAGCATGGTGTGATCGTATCTTGTGGTATGGAAGAGGCCTCCGCCAATTATCTTATGTTCGTGGGGAGTCAAGATTCTCTGATCATAGACCAGTGTACAGCATGTTCTTGGCAGAAGTCGAGTCTGTCAGCCGTAACCGAATCAAAAAATGCTCTAGTTGCTCCAGTTCAAGGATTGAAGTAGAAGAGTTGTTGCCTCATTTACATGCTAGCCCCAATGGTGATGTAGACATTCTGTTACTCTCGCAGTCCCAAAGAAGCTGCAGACTCAATGTAAATAACATCTCATTTATCATTAATAAGAAACATAAAAAGAATTACTGCTGTGATGGTTGCTCATTGCTTATGATAGAAAAGATATGTGCAAGTTCTGGCGGATATGAAGCTTCTTTTTCTTGTAGCAGCTAA 1845 0.4228 MRDENSMKSKLSWPKTLVKKWFNIKSKAEDFQADDVLYGGVDEEWRSNSSQREECTIKKSKTERAKRRHPDRMRRGKIDLDAAQVTDVHNYRIFVATWNVAGKSPPSYLSLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRKTLNSLPGTSGECHTTSPLPDPIVELDDDFEGSMRQKATSFFHRRSFQSFSHSMRMDNDMSLPQACLDRRLSVCDRMIFDHRTSDYDPNYRWPSSDDENGDSPVITQYSPMSYRGCFSMEDRDRPTEHSRYCLVASKQMVGIFLTVWVRSSIRDDVHNMKVSCVGRGLMGYLGNKGSISISMSLHKTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVQGMGDESSPQTILEHDRIIWLGDLNYRIALSYRAAKALVEMHNWKVLLENDQLHIEQGEGRVFEGWNEGKIYFPPTYKYSNNSDRYAGDERRSKQKRRTPAWCDRILWYGRGLRQLSYVRGESRFSDHRPVYSMFLAEVESVSRNRIKKCSSCSSSRIEVEELLPHLHASPNGDVDILLLSQSQRSCRLNVNNISFIINKKHKKNYCCDGCSLLMIEKICASSGGYEASFSCSS* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01333 614 SUPERFAMILY DNase I-like 75 532 IPR036691 -
Rops6g01333 614 Gene3D Endonuclease/exonuclease/phosphatase 71 212 IPR036691 -
Rops6g01333 614 Gene3D Endonuclease/exonuclease/phosphatase 225 543 IPR036691 -
Rops6g01333 614 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 18 535 IPR045849 GO:0004445
Rops6g01333 614 FunFam Type IV inositol polyphosphate 5-phosphatase 7 257 543 - -
Rops6g01333 614 MobiDBLite consensus disorder prediction 49 72 - -
Rops6g01333 614 Pfam Endonuclease/Exonuclease/phosphatase family 96 508 IPR005135 GO:0003824
Rops6g01333 614 FunFam type I inositol polyphosphate 5-phosphatase 4 isoform X1 71 183 - -
Rops6g01333 614 SMART i5p_5 225 523 IPR000300 GO:0016791|GO:0046856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01333 Rops-Chr6 28798449 28803114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01333 283 575 Acyl Lipid Metabolism Gene Families AT1G65580 29.674 4.15e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01333 - - gmx:100788764 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01333 6 28798449 28803114 Rops6g01333 6 28798449 28803114 ECH
Rops8g03029 8 67329100 67333791 Rops6g01333 6 28798449 28803114 PCT