Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03024 ATGGCACACAGAAGAAAGGTTGAGGTGTTGGTTAGCACATCCCTTGTGGTGGTGGTGGCTCTTTGGGGAGTTACAATGGCTCAATCTCAATCAAGTTGCACCAATGTGCTCTTAAGTCTTTCTCCATGCCTTGACTACATAACAGGAAGTGCCTCCGCCCCATCTTCTGGTTGCTGCTCACAACTTGCCTTTGTGGTAGGGTCACAGCCACAGTGCCTATGTGAGGTTGTTAATGGTGGTGCCTCATCTATTGCTGCCAGTCTCAACATCAATCAGACTCGGGCTTTGACACTTCCCACTGCTTGCAATGTCCAGACACCTCCTATTAGCACCTGCGGTGGTTCTGCTTCTTCTTCTTCTTCTCCTCCAACAGGTGTTTCTATTTCCAACATTCCAAATTCCCCTTCAGGGAGTGGATACAATACTGTTTCATCAACGACCGGAAGAAGTGGAGGTATAGGTGGCTCATATCATGGAAATTCAAGTTCCAAGAAATTACCATGTTCTTTGCTTCTTTTGCTTCTCTTTGCATCAACTTTGACTTTCACCTTCAGGACCACGACATAG 567 0.4656 MAHRRKVEVLVSTSLVVVVALWGVTMAQSQSSCTNVLLSLSPCLDYITGSASAPSSGCCSQLAFVVGSQPQCLCEVVNGGASSIAASLNINQTRALTLPTACNVQTPPISTCGGSASSSSSPPTGVSISNIPNSPSGSGYNTVSSTTGRSGGIGGSYHGNSSSKKLPCSLLLLLLFASTLTFTFRTTT* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03024 188 CDD AAI_LTSS 40 104 - -
Rops8g03024 188 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 32 113 IPR036312 -
Rops8g03024 188 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 16 148 IPR043325 -
Rops8g03024 188 SMART aai_6 33 112 IPR016140 -
Rops8g03024 188 Pfam Probable lipid transfer 17 112 IPR016140 -
Rops8g03024 188 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 30 111 - -
Rops8g03024 188 Gene3D - 30 112 IPR036312 -
Rops8g03024 188 PRINTS Plant phospholipid transfer protein signature 53 67 IPR000528 GO:0006869|GO:0008289
Rops8g03024 188 PRINTS Plant phospholipid transfer protein signature 89 106 IPR000528 GO:0006869|GO:0008289
Rops8g03024 188 PRINTS Plant phospholipid transfer protein signature 32 48 IPR000528 GO:0006869|GO:0008289
Rops8g03024 188 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03024 Rops-Chr8 67315767 67316989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03024 1 177 Acyl Lipid Metabolism Gene Families AT2G48130 40.437 6.97e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03024 - - gmx:100789510 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03024 8 67315767 67316989 Rops8g03024 8 67315767 67316989 ECH
Rops6g01338 6 28848912 28849946 Rops8g03024 8 67315767 67316989 PCT