Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01338 ATGGCGTTTAGAGGGTTTGTCCTGTGTCTAGTTATGGTCCTGGTGGCCACTATGTGGACTCAAAGTGCAGCTCAATCAGGTTGCACCAGTGCACTTACTAGCTTGAGTCCTTGCCTGAACTACATAATGGGAAGTTCATCAACCCCATCAGCTTCATGTTGCTCACAGCTCTCAAGTGTTGTCCAATCTTCACCACAGTGTCTCTGCTCTGTGCTTAATGGTGGAGGTTCCTCATTTGGAATCACCATAAACCAAACTCTTGCTCTATCTCTCCCTGGCGCTTGTAAAGTGAAAACTCCACCTCTTAGCCAGTGCGGAGCTGGCAATGCACCAATATCTCCTTCAACTGCTCCAGTTGGTTCTCCATCTGATTCTTCAACTGAATCACCTGAAGGCTCAATTACACCTTCTGCTTCAGACTTTCCCTCAGGTGCAGGATCAAAAAGTTTCCCATCATCAGACGGTGGCTCATCTGATGGAAGCATTGTTAAAGTTCCCTTCCACTTTGTGCTGTATCTTCTTGCCGTTGTGTCTTGTGTCACCAAGTTCTGA 552 0.4692 MAFRGFVLCLVMVLVATMWTQSAAQSGCTSALTSLSPCLNYIMGSSSTPSASCCSQLSSVVQSSPQCLCSVLNGGGSSFGITINQTLALSLPGACKVKTPPLSQCGAGNAPISPSTAPVGSPSDSSTESPEGSITPSASDFPSGAGSKSFPSSDGGSSDGSIVKVPFHFVLYLLAVVSCVTKF* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01338 183 Pfam Probable lipid transfer 11 105 IPR016140 -
Rops6g01338 183 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 106 IPR036312 -
Rops6g01338 183 SMART aai_6 28 105 IPR016140 -
Rops6g01338 183 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 25 104 - -
Rops6g01338 183 Gene3D - 25 105 IPR036312 -
Rops6g01338 183 MobiDBLite consensus disorder prediction 112 159 - -
Rops6g01338 183 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Rops6g01338 183 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Rops6g01338 183 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Rops6g01338 183 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 10 146 IPR043325 -
Rops6g01338 183 CDD AAI_LTSS 35 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01338 Rops-Chr6 28848912 28849946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01338 1 183 Acyl Lipid Metabolism Gene Families AT2G48130 42.553 1.84e-43 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01338 - - gmx:100306151 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01338 6 28848912 28849946 Rops6g01338 6 28848912 28849946 ECH
Rops6g01338 6 28848912 28849946 Rops8g03024 8 67315767 67316989 PCT