Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02949 ATGGACATTGCTTTTTATTCTCTTCTTTTCATGTGCTTAATGCAATTCTCACAAGCCATGTTAGACCCCACTGATTTCTTGGCCTTACAATCGATTCGAAAGTCACTGCATGATGTTCCTGGTTCTAATTTCTTTGCTTCCTGGGATTTTACTGCTGATCCTTGTAACTTCGCCGGAGTTTACTGTTCCTCCGATAAGGTCATTGCTCTAAATCTCGGTGAACCCAAGGCTGGTTCGCCGGGGCTCACCGGAAAACTAGACCTGGCAATCGGAAAACTCTCTGCTCTCGCCGACTTCACCGTCGTTCCCGGTCGGATTTACGGTACTCTTCCTCAATCTCTCTCCCAATTGAAGAACCTCCGGTTCCTCGGTATCACCAGGAATTTCATCACCGGCGAGATACCGGCATGTCTGGGTCAGCTTCACAACCTCAGAACCATCGATCTCAGCTACAACCAACTCACCGGAACCATCCCTCCGTCCATCGGAACCTTGCCGGAGCTAACAAACCTTATCCTCGTTCACAACCACCTCTCCGGTTCGGTTCCCTCTTTTGCTTCGGCTCAATCCCTAACCCGGCTCGATCTTAAACACAACACTCTCTCCAGTTCACTCGCTCCTGCTTCTCTCCCTCCTTCACTCCAATACCTCTCTCTGTCATGGAACCAGTTAACTGGACCGGTGGACCGGGTACTAAACCGGCTCAACAAGCTCAACTACATTAACCTGAGCTTGAACCGGTTCACTGGTTCAATTCCGGTTCAACTATTCTCTTTCCCACTCACTAATCTCCACCTTGAAAGAAACCAATTCACCGGTCCGATTCAACCGGTTAATGAGGTAAAGATCCAAACCGTTGATCTCAGCCACAATGAACTCTCAGGTGAAGTATCTCCCATGCTTGCGAGCGTACAGAATCTCTACCTCAACAATAACGGGTTCACGGGTCAGGTTCCGGGTAGCTTCGTGGAGCGGTTATTGGCGTCGAATATTCAGATACTTTATTTGCAGCACAATTACCTTACTGGAATTGCAATAAACCCAACCGCAGAGATTCCATTAAGCAGCACCCTGTGTTTGCACTATAATTGTATGGTGCCACCCATTCAATCGACGTGTCCCCTCAAAGCTGGGAACCAGAAAATAAGGCCTGCTCAGCAGTGCAACCATTGA 1173 0.4851 MDIAFYSLLFMCLMQFSQAMLDPTDFLALQSIRKSLHDVPGSNFFASWDFTADPCNFAGVYCSSDKVIALNLGEPKAGSPGLTGKLDLAIGKLSALADFTVVPGRIYGTLPQSLSQLKNLRFLGITRNFITGEIPACLGQLHNLRTIDLSYNQLTGTIPPSIGTLPELTNLILVHNHLSGSVPSFASAQSLTRLDLKHNTLSSSLAPASLPPSLQYLSLSWNQLTGPVDRVLNRLNKLNYINLSLNRFTGSIPVQLFSFPLTNLHLERNQFTGPIQPVNEVKIQTVDLSHNELSGEVSPMLASVQNLYLNNNGFTGQVPGSFVERLLASNIQILYLQHNYLTGIAINPTAEIPLSSTLCLHYNCMVPPIQSTCPLKAGNQKIRPAQQCNH* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02949 390 FunFam Nuclear pore complex protein NUP107 23 184 - -
Rops8g02949 390 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Rops8g02949 390 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 14 389 - -
Rops8g02949 390 SUPERFAMILY L domain-like 32 369 - -
Rops8g02949 390 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Rops8g02949 390 Pfam Leucine Rich repeat 189 202 IPR001611 GO:0005515
Rops8g02949 390 Pfam Leucine Rich repeat 212 226 IPR001611 GO:0005515
Rops8g02949 390 Gene3D Ribonuclease Inhibitor 210 384 IPR032675 -
Rops8g02949 390 Gene3D Ribonuclease Inhibitor 22 209 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02949 Rops-Chr8 66178443 66179788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02949 24 343 Receptor kinase-like Gene Family AT3G51740 32.303 4.70e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02949 - - gmx:100817314 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02949 8 66178443 66179788 Rops8g02949 8 66178443 66179788 ECH
Rops8g02949 8 66178443 66179788 Rops6g02216 6 40592894 40594583 PCT