Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02398 ATGTTGAGGGTTGCAACTAAGAGGCTTTCTTCTCTCTCTTCCTCTCCATGGAGGGCCAACTACGCCGCTTCCGCTTTCCTCTCTCGGACTCCTCCCTTTTCCTCCGATGAGCGCAGATCCGACCCGTTTACGATCCGACCCGAATCCTTCCTTCCCTTCAGAGGTTTTGCTACTGAATCGCTGATCCACACAAAAGAAAACAGCATTATTCCTGAAATTCCAGCAACTATTGCAGCTGTTAAAAACCCTTCTTCTAAGATTGTTTATGATGAACACAACCATGAACGATTTCCTCCAGGTGACCCAAGCAAGAGGGCATTTGCCTACTTTGTCCTTACAGGTGGTAGGTTTGTTTATGCCTCACTAATCCGTCTCCTTATCCTCAAGTTTGTGCTCAGCATGTCAGCAAGTAAGGATGTTCTTGCTATGGCTTCACTTGAAGTTGATCTCTCCAGCATTGAGCCAGGCACTACTGTGACTGTTAAGTGGCGTGGAAAGCCAGTATTCATCAGGCGCAGAACAGAAGATGATATAAATCTGGCAAACAGTGTTGATGTTGGATCTCTTCGTGATCCTCAGCAGGATTCAGATAGGGTTAAGAACCCAGAATGGCTCATTGTGATTGGGGTTTGCACACATCTGGGTTGCATTCCCTTGCCAAACGCCGGTGACTTTGGTGGATGGTTTTGCCCATGCCATGGTTCACATTATGATATTTCTGGCAGAATTAGGAAGGGACCTGCACCATACAATCTGGAGGTACCAACTTATAGCTTCATGGAGGAAAACAAGTTGTTGATTGGTTGA 807 0.4634 MLRVATKRLSSLSSSPWRANYAASAFLSRTPPFSSDERRSDPFTIRPESFLPFRGFATESLIHTKENSIIPEIPATIAAVKNPSSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDVGSLRDPQQDSDRVKNPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFMEENKLLIG* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02398 268 Gene3D - 137 268 IPR036922 GO:0051537
Rops8g02398 268 CDD Rieske_cytochrome_bc1 145 268 - -
Rops8g02398 268 SUPERFAMILY ISP domain 130 267 IPR036922 GO:0051537
Rops8g02398 268 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 76 268 IPR014349 GO:0051537
Rops8g02398 268 Pfam Rieske [2Fe-2S] domain 151 254 IPR017941 GO:0051537
Rops8g02398 268 Pfam Ubiquinol cytochrome reductase transmembrane region 94 139 IPR004192 GO:0008121
Rops8g02398 268 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 138 268 - -
Rops8g02398 268 SUPERFAMILY ISP transmembrane anchor 85 141 - -
Rops8g02398 268 PRINTS Rieske 2Fe-2S subunit signature 206 217 IPR005805 GO:0016020|GO:0051537
Rops8g02398 268 PRINTS Rieske 2Fe-2S subunit signature 240 252 IPR005805 GO:0016020|GO:0051537
Rops8g02398 268 PRINTS Rieske 2Fe-2S subunit signature 228 240 IPR005805 GO:0016020|GO:0051537
Rops8g02398 268 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 198 266 IPR017941 GO:0051537
Rops8g02398 268 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 124 268 IPR006317 GO:0008121
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02398 Rops-Chr8 55512483 55515011 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02398 K00411 - gmx:100806917 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02398 8 55512483 55515011 Rops8g02398 8 55512483 55515011 ECH
Rops8g02398 8 55512483 55515011 Rops5g02060 5 44120330 44129598 PCT