Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02309 ATGGCTGCCTCATCCTCCTTCTCCAACTTCTTCTCTTTTCTTTTACCAGCAAAGCCACAATCACCCAAACTCACACTCTCTCCTTCTTCACTGACTCGTTTCCCATCTCAGAAACCAGGTGATAACTTGGTGCCACTGCTTGCACACCACGATAATCACTCTTCTTCTGCTTCATCAGAGTTGTCTTCTGTGATGAACCCCTCTCTTGCAAATGCCAACACCCTCTTCTTCAGATCAGCCTACAATGTGCAGGTGGTTGTGGATGAGAATGAGCCAGAGGAGAGGCTTCTCAACAGATTCAGAAGAGAGGTTATGAGAGCAGGTGTGATTCAAGAGTGTAAGAGGAGAAGGTTCTATGAGAATAAACAGGATGAGAAGAAACGCAAAACCCGTGAGGCTGCAAAACGGAACCGCAAATCCAGGCGCCCTCAGATGAGATCTCCAATGTGGAATAAGCAGGATGTTCCAACAACCAAGAAGGAAGAGGATGATGATAACTGGGATCTACCCGAAGAAGGGGCGCCAAATTTTTGA 534 0.4682 MAASSSFSNFFSFLLPAKPQSPKLTLSPSSLTRFPSQKPGDNLVPLLAHHDNHSSSASSELSSVMNPSLANANTLFFRSAYNVQVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFYENKQDEKKRKTREAAKRNRKSRRPQMRSPMWNKQDVPTTKKEEDDDNWDLPEEGAPNF* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02309 177 Coils Coil 119 139 - -
Rops8g02309 177 NCBIfam 30S ribosomal protein S21 83 139 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops8g02309 177 MobiDBLite consensus disorder prediction 121 177 - -
Rops8g02309 177 Hamap 30S ribosomal protein S21 [rpsU]. 82 138 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops8g02309 177 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 174 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops8g02309 177 Gene3D Ribosomal protein S8 97 135 IPR038380 -
Rops8g02309 177 PRINTS Ribosomal protein S21 family signature 94 103 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops8g02309 177 PRINTS Ribosomal protein S21 family signature 106 116 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops8g02309 177 PRINTS Ribosomal protein S21 family signature 86 94 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops8g02309 177 PRINTS Ribosomal protein S21 family signature 118 128 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops8g02309 177 Pfam Ribosomal protein S21 84 138 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02309 Rops-Chr8 53086748 53088187 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02309 - - gmx:100780245 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02309 8 53086748 53088187 Rops5g01788 5 37453552 37455777 PCT