Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01788 ATGGCTGTCTTATCCCCACTTTCCAACTTCCTCAATTTCCTCTTACCCACAAAACCACCGCCGCCACCGTCGACGGCACTACCACCACCGCAGCTGAACCTCCCTTCTCCTCCATCCACTCCTTTCCCTTCTCAAACCCTCAAATCACCACCACCACACAATTCAGTGCCACTGGTTTCTTCATCTTCTTTTTCTTCTTCTTGTGATGAGTTATCCTCTGTGATATGCCCTTCTCTTGCGTATTCAAACACTCTCTTCTTCAGATCACCGTACAACGTTCAGGTGGTGGTTGGTGAAGATGAAGGAGAGGAGAGGCTTCTGAACAGGTTTCGCAGAGAGGTTATGAGAGCTGGTGTGATTCAAGAGAGTAAGAGGAGAAGGTACTTTGAGAATAAACAAGAAGAGAAGAAACGCAAGTCACGTGAAGCTGCCAAGCGTAATAGCCGTAGAAGGCGCCCCCTGCTAAAAGCTTTAGCACAGAACAAGCTGGATGTCCCAACAACCAAGAAGGAAGAGGATGAGGATAACTGGGATCTACCTGAAGGAGACTCCCCATATTGA 561 0.4813 MAVLSPLSNFLNFLLPTKPPPPPSTALPPPQLNLPSPPSTPFPSQTLKSPPPHNSVPLVSSSSFSSSCDELSSVICPSLAYSNTLFFRSPYNVQVVVGEDEGEERLLNRFRREVMRAGVIQESKRRRYFENKQEEKKRKSREAAKRNSRRRRPLLKALAQNKLDVPTTKKEEDEDNWDLPEGDSPY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01788 186 MobiDBLite consensus disorder prediction 142 156 - -
Rops5g01788 186 Pfam Ribosomal protein S21 94 147 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops5g01788 186 NCBIfam 30S ribosomal protein S21 93 150 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops5g01788 186 MobiDBLite consensus disorder prediction 18 61 - -
Rops5g01788 186 PRINTS Ribosomal protein S21 family signature 96 104 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops5g01788 186 PRINTS Ribosomal protein S21 family signature 128 138 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops5g01788 186 PRINTS Ribosomal protein S21 family signature 104 113 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops5g01788 186 PRINTS Ribosomal protein S21 family signature 116 126 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops5g01788 186 Gene3D Ribosomal protein S8 107 145 IPR038380 -
Rops5g01788 186 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 186 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops5g01788 186 Hamap 30S ribosomal protein S21 [rpsU]. 92 148 IPR001911 GO:0003735|GO:0005840|GO:0006412
Rops5g01788 186 MobiDBLite consensus disorder prediction 18 50 - -
Rops5g01788 186 MobiDBLite consensus disorder prediction 130 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01788 Rops-Chr5 37453552 37455777 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01788 - - vra:106765493 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02309 8 53086748 53088187 Rops5g01788 5 37453552 37455777 PCT