Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02304 ATGGCTATTTTAGGCTTGATGCATTTTGCTGCTTTGACCCTCTCTCTCTTGGTGTTAACATCTTTGCCTCATCAAGCACACTCTTCAAGCCGTGGCTTCTTTGGTAGAAAACATGTTGATGCTTCCCCTCAAGTGGATGGTATATGCGCCTCTTCTGTCATTGTTCATGGATACAAGTGCCAAGAACTTGAGGTTACAACTAAGGATGGGTACATTCTGAGCCTGCAAAGGATCCCAGAAGGTCGAGGTGAAGTTAGTGATGGTGGGACTAAAAAGCAGCCAGTGATAATACAACATGGAGTACTAGTGGATGGGATGACATGGCTTCTGAACGGTCCAGAGCAGGACCTGCCTTTGATTCTGGCTGATAATGGCTTCGACGTGTGGATTGCTAACACCAGAGGAACCAGATTTAGTCGCCGACATGTCTCATTGGACCCCTCTAACCCGGCCTTTTGGAATTGGTCTTGGGATGAATTGGTTTCCTATGATCTACCTGCTGTGTTTGATTATGTGTTCAGCCAAACAGGGCAGAAGATTAATTACGTTGGCCATTCTCTGGGGACTTTAATAGCTTTGGCTTCCTTCTCCGAAGGTAAATTGGTTAACCAGCTGAAATCTGCAGCTTTGTTAAGCCCTATTGCCTATTTGAGCCACATGAACACCGCACTTGGAGCTGTTGCAGCTAAGACCTTTGTTGGTGAGATCACTACCATATTTGGTCTTGCAGAATTTAATCCTAAAGGGTTAGCTGTTGGTGCCTTTCTCAAGTCTCTCTGTGCTAACGCTGGGATAGACTGCTACGACTTGTTGACTGCATTAACTGGTAAAAATTGCTGCCTCAATTCTTCAACTGTTGATCTATTCTTGATGAATGAACCTCAGTCAACATCAACAAAGAACATGGTGCATTTGGCTCAGACTGTTAGACGTGGGGTTCTGGCAAAATTCAATTATGTGAGACCAGATTATAATATTATGCATTATGGAGAAATATTCCCTCCAATCTATAACCTTTCAAACATCCCTCATGATCTCCCTCTCTTCATTAGCTATGGAGGCCAAGATGCACTTTCTGATGTACGTGATGTTGAGAATTTACTTGATAGACTTAAGTTCCATGATGAGGATAAGCGAAGTGTCCAGTTCATCAAGGAATATGCTCATGCTGATTACATTATGGGGTTCAATGCAAAGGACATGGTGTATAATGCTGTTCTTTCCTTTTTCAATCGTCAAGTCAAAACTTGA 1251 0.4301 MAILGLMHFAALTLSLLVLTSLPHQAHSSSRGFFGRKHVDASPQVDGICASSVIVHGYKCQELEVTTKDGYILSLQRIPEGRGEVSDGGTKKQPVIIQHGVLVDGMTWLLNGPEQDLPLILADNGFDVWIANTRGTRFSRRHVSLDPSNPAFWNWSWDELVSYDLPAVFDYVFSQTGQKINYVGHSLGTLIALASFSEGKLVNQLKSAALLSPIAYLSHMNTALGAVAAKTFVGEITTIFGLAEFNPKGLAVGAFLKSLCANAGIDCYDLLTALTGKNCCLNSSTVDLFLMNEPQSTSTKNMVHLAQTVRRGVLAKFNYVRPDYNIMHYGEIFPPIYNLSNIPHDLPLFISYGGQDALSDVRDVENLLDRLKFHDEDKRSVQFIKEYAHADYIMGFNAKDMVYNAVLSFFNRQVKT* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02304 416 PANTHER LYSOSOMAL ACID LIPASE-RELATED 52 412 - -
Rops8g02304 416 Pfam Partial alpha/beta-hydrolase lipase region 55 112 IPR006693 GO:0006629
Rops8g02304 416 FunFam Lipase 41 412 - -
Rops8g02304 416 Gene3D alpha/beta hydrolase 37 412 IPR029058 -
Rops8g02304 416 Pfam alpha/beta hydrolase fold 116 264 IPR000073 -
Rops8g02304 416 SUPERFAMILY alpha/beta-Hydrolases 56 411 IPR029058 -
Rops8g02304 416 PIRSF Steryl_ester_lip 5 415 IPR025483 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02304 Rops-Chr8 53023868 53028874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02304 36 416 Acyl Lipid Metabolism Gene Families AT2G15230 37.795 1.66e-95 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02304 - K01052 gmx:100779460 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02304 8 53023868 53028874 Rops5g01784 5 37393033 37401248 PCT