Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02303 ATGGGGCGCAAGAACACAATTTTCTTGGCATTGGTTGTTGCTTTCATCACAAAGGAGGCCTTAGCAGAACAACACGCAGTTGGTGGAGGCCAAGGTTGGGATGCATCCACAGACTTTGACTCTTGGGTTTCAGGGCAAACATTTAAGGTTGGCGATCAACTTGTTTTCAAGTATTCTTCTGGGTTGCATAGTGTGGTTGAACTAGGCAGTGAGAGTGACTACAAGAGTTGTGATCTTGGTAGTGCAGTGAACTCCATGAGCAGTGGTAATGATGTTGTAAAACTGAACAAGCCTGGTACAAGGTACTTTGCCTGTGGTACCTTAGGCCACTGTAGTCAAGGCATGAAGGTGAAGATTGCAACAGTGTCTGGAAATGCACCCTCTTCTTCTTCTTCAACTTCTTCCACTTCTGCTGCTTCTTCAACCTCACAAGGCTTCGTCTCTCTTGTTCTCGTTGTTGCATTGTTGATTGCCTCTCTGCTTCACTAG 489 0.4581 MGRKNTIFLALVVAFITKEALAEQHAVGGGQGWDASTDFDSWVSGQTFKVGDQLVFKYSSGLHSVVELGSESDYKSCDLGSAVNSMSSGNDVVKLNKPGTRYFACGTLGHCSQGMKVKIATVSGNAPSSSSSTSSTSAASSTSQGFVSLVLVVALLIASLLH* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02303 162 PANTHER BLUE COPPER PROTEIN 22 133 IPR039391 GO:0009055
Rops8g02303 162 Pfam Plastocyanin-like domain 35 115 IPR003245 GO:0009055
Rops8g02303 162 SUPERFAMILY Cupredoxins 22 121 IPR008972 -
Rops8g02303 162 CDD Phytocyanin 24 119 - -
Rops8g02303 162 FunFam Blue copper 21 127 - -
Rops8g02303 162 Gene3D - 21 127 IPR008972 -
Rops8g02303 162 ProSiteProfiles Phytocyanin domain profile. 23 123 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02303 Rops-Chr8 53014691 53015716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02303 17 122 Miscellaneous Gene Families AT3G27200 72.642 1.44e-54 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02303 - - gmx:100305865 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02303 8 53014691 53015716 Rops8g02303 8 53014691 53015716 ECH
Rops5g01785 5 37413694 37414915 Rops8g02303 8 53014691 53015716 PCT