Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02177 ATGGGTTTGTTTTTTGGGATTTTCCTGGGGATAGCATTTGGCATGGCATTGATGGCTGCGTGGCAACGCATGATGAGTTACCGAAGCGCCAAGCGAATTGCAAAGGCAGTTGACATTAAACTCCTTGGGTCCCTTAACAGAGATGATTTAAAGAAAATTTGTGGTGAAAATTTTCCTGAATGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGCTAAACAAGCTGCTGTCTAAACTTTGGCCATTTGTCGCAGATGCGGCAACATTGGTGATAAGAGAATCTGTTGAACCGCTATTAGAAGAGTACAGACCTCCTGGAATTACTTCATTGAAGTTCGGTAAGCTGTCGCTTGGAACTGTCGCTCCAAAAATTGAAGGCATTCGTGTTCAAAGTCTTAATAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGGGATCCCAATATTGTTTTGGCTGTTGAAGCTGCACTTGTTGCGTCAATTCCTATTCAGTTGAAGGATCTCCAGGTTTTCAGCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTGTTGTAGTTGCCCTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTCTGAAGGCTATTGGTGGAAGTTTGACGGCACTTCCTGGAATTTCAGATATGATTGATGATACTGTAAACTCAATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCGCTTGGTGGTATTCCTGTTGATACCAGTGAAATGGAGCTTAAACCCCAAGGAAGGCTTACAGTGACTATAATCAAAGCAAATGATTTAAAGAATAAGGAAATGATTGGGAAGTCTGATCCATATGTAGTTGTGCATATTCGACCACTGTTTAAGGTTAAAACAAAGGTTGTTGATAACAACCTGAATCCTGTTTGGAACGAGGTTTTTGACTTGATTGCTGAAGACAAGGAGACCCAGTCACTCATTCTTGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGCAAAACTACCACTTATTGACCTGGAAGCAGAAACTGAAAAGGAGTTCGAATTGAGGCTGCTGTCATCACTTGATACACTGAAAGTGAAAGATAAGAAGGATCGAGGAACCTTGACAGTAAAGATCCTTTATCATCAATTTGACAAGGAAGAACAGTTTGCTGCATTAGAAGCAGAGAAAAGGATACTAGAAGGAAGGAAGAAACTGAAAGAAGAGGGAGTTATAGGAAGTACAATGGATGCACTAGATGGAGCAGCATCAGTAGTTGGGTCTGGTGTGGGACTAGTTGGTACTGGTGTTGCTACTGGTGCTGGACTTGTGGGAACTGGAATTGGTGCTGGTGCTGGACTTGTGGGAACTGGAATTGGGGCAGGAGCTGGACTTGTTGGCAGTGGTCTTGGTGCTGTTGGTAGTGGACTTAGCAAGGCAGGAAGGTTCATGGGTAGGACAATCACAGGACAAGGTGCATCCAGAAGGAGTGGTTCATCTACTCCTGTTAATAATGTGGAGGAGGCTGGTGGTGGTGCAAAGCCTAGGTAA 1575 0.4298 MGLFFGIFLGIAFGMALMAAWQRMMSYRSAKRIAKAVDIKLLGSLNRDDLKKICGENFPEWISFPVYEQVKWLNKLLSKLWPFVADAATLVIRESVEPLLEEYRPPGITSLKFGKLSLGTVAPKIEGIRVQSLNKGQIIMDIDFRWGGDPNIVLAVEAALVASIPIQLKDLQVFSIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAIGGSLTALPGISDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSEMELKPQGRLTVTIIKANDLKNKEMIGKSDPYVVVHIRPLFKVKTKVVDNNLNPVWNEVFDLIAEDKETQSLILEVFDKDIGQDKRLGIAKLPLIDLEAETEKEFELRLLSSLDTLKVKDKKDRGTLTVKILYHQFDKEEQFAALEAEKRILEGRKKLKEEGVIGSTMDALDGAASVVGSGVGLVGTGVATGAGLVGTGIGAGAGLVGTGIGAGAGLVGSGLGAVGSGLSKAGRFMGRTITGQGASRRSGSSTPVNNVEEAGGGAKPR* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02177 524 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Rops8g02177 524 CDD SMP_SYT 59 248 - -
Rops8g02177 524 FunFam synaptotagmin-4 isoform X1 259 417 - -
Rops8g02177 524 PRINTS C2 domain signature 281 293 IPR000008 -
Rops8g02177 524 PRINTS C2 domain signature 328 336 IPR000008 -
Rops8g02177 524 PRINTS C2 domain signature 306 319 IPR000008 -
Rops8g02177 524 ProSiteProfiles C2 domain profile. 247 363 IPR000008 -
Rops8g02177 524 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Rops8g02177 524 Pfam C2 domain 264 360 IPR000008 -
Rops8g02177 524 Gene3D C2 domain 259 417 IPR035892 -
Rops8g02177 524 SMART C2_3c 265 362 IPR000008 -
Rops8g02177 524 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 409 IPR045050 GO:0008289
Rops8g02177 524 MobiDBLite consensus disorder prediction 498 514 - -
Rops8g02177 524 MobiDBLite consensus disorder prediction 496 524 - -
Rops8g02177 524 CDD C2 266 360 - -
Rops8g02177 524 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02177 Rops-Chr8 50355327 50363652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02177 266 356 Lipid Metabolism Gene Families AT4G00700 39.560 4.19e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02177 - - gmx:100785209 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02177 8 50355327 50363652 Rops4g01347 4 35134503 35146562 PCT