Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01347 ATGGCAGCGTGGGAACGCATGATGAGGTACCGAAGTGCCAAACGAATTGCAAAGGCAGCTGACATTAAACTCCTTGGATCCCTTAACAGAGATGATTTAAAGAAAATTTGCGGTGATAATGTTCCTGAGTGGATATCTTTTCCTGTATACGAGCAGGTGAAATGGCTAAACAAGCAGCTGACCAAACTTTGGCCATTTGTGGCAGAAGCAGCAACGATGGTGATCAGGGAATCTGTTGAACCTCTACTGGAAGAGTACAGACCTCCTGGAATTACTTCGTTGAAGTTCAGCAAGTTGTCACTTGGAAATGTGGCTCCAAAAATTGAAGGTATTCGTGTGCAGAGTCTTACCAAAGGTCAAATTATAATGGACATTGATCTCCGTTGGGGTGGTGATCCCAGTATTATATTGGCTGTTGAAGCTGCACTTGTTGCATCGATCCCTATTCAGTTGAAGGATCTAAAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCTGTAGTTGTTGCTCTACTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCCGTTGGTGGAAGTTTGACGGCAATTCCAGGAATTTCAGATATGATTGATGATACTGTGAACACAATCGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCACTTGGTGGTATACCTGTTGATACTAGTGAATTGGAGCTTAAACCTCAGGGAAACCTTATAGTGACTGTAGTGAAAGCAACTAATCTAAAGAATATGGAAATGATTGGAAAATCAGATCCATATGTAGTTTTGTATATTCGACCGTTATTTAAGGTTAAAACCAAGGTTATTGATAACAACTTGAATCCTATTTGGGATCAGACATTTGAATTGATTGCAGAAGACAAGGAGACCCAGTCACTCATTCTTGAGGTTTTTGATAAAGACATTGGGCAAGATAAGCGATTGGGAATAGTAAAATTACCCCTTATTGACTTGGAAGCACAAACTGAAAAGCAGCTCGAATTGAAACTACTGTCATCACTTGATACTCTTAAGGTGAAAGATAAGAAGGATCGAGGAACATTGACAGTAAAGGTCTTGTATCATCAGTTTAACAAGGAAGAGCAGTTGGCTGCACTAGAAGCAGAAAAAAAGATACTAGAAGAAAGGAAGAGACTGAAAGCGGAAGGAGTCATAGGAAGCACAATGGATGCACTAGATGGGGCAGTATCAGTGGTAGGGTCTGGTGTTGGACTGGTTGGTACTGGTGTTGTTGCCGGTGCCGGGCTTGTGGGAAGTGGCATTGGTGCTGGAGCTGGGCTTGTTGGCAGTGGTCTTGGAGCCTTTGGTAGTGGACTAAGCAAGGCAGGGAAGTTCATGGGAAGGACAATCACAGGTCATAGTGGCTCCAGAAAGAGTGGTTCATCTACTCCGGTCAATAATGCACAGGAGAATGGTGGTGGTGCAAAGCCACTTTGA 1491 0.4286 MAAWERMMRYRSAKRIAKAADIKLLGSLNRDDLKKICGDNVPEWISFPVYEQVKWLNKQLTKLWPFVAEAATMVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDLRWGGDPSIILAVEAALVASIPIQLKDLKVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNTIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGNLIVTVVKATNLKNMEMIGKSDPYVVLYIRPLFKVKTKVIDNNLNPIWDQTFELIAEDKETQSLILEVFDKDIGQDKRLGIVKLPLIDLEAQTEKQLELKLLSSLDTLKVKDKKDRGTLTVKVLYHQFNKEEQLAALEAEKKILEERKRLKAEGVIGSTMDALDGAVSVVGSGVGLVGTGVVAGAGLVGSGIGAGAGLVGSGLGAFGSGLSKAGKFMGRTITGHSGSRKSGSSTPVNNAQENGGGAKPL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01347 496 PRINTS C2 domain signature 289 302 IPR000008 -
Rops4g01347 496 PRINTS C2 domain signature 264 276 IPR000008 -
Rops4g01347 496 PRINTS C2 domain signature 311 319 IPR000008 -
Rops4g01347 496 MobiDBLite consensus disorder prediction 470 488 - -
Rops4g01347 496 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 400 IPR045050 GO:0008289
Rops4g01347 496 CDD C2 249 343 - -
Rops4g01347 496 SMART C2_3c 248 345 IPR000008 -
Rops4g01347 496 Coils Coil 374 394 - -
Rops4g01347 496 MobiDBLite consensus disorder prediction 466 496 - -
Rops4g01347 496 CDD SMP_SYT 42 231 - -
Rops4g01347 496 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 245 374 IPR035892 -
Rops4g01347 496 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 49 232 IPR031468 GO:0008289
Rops4g01347 496 ProSiteProfiles C2 domain profile. 230 346 IPR000008 -
Rops4g01347 496 Gene3D C2 domain 242 400 IPR035892 -
Rops4g01347 496 FunFam synaptotagmin-4 isoform X1 242 400 - -
Rops4g01347 496 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 51 231 IPR039010 -
Rops4g01347 496 Pfam C2 domain 247 343 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01347 Rops-Chr4 35134503 35146562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01347 232 333 Lipid Metabolism Gene Families AT3G61300 31.068 1.37e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01347 - - gmx:100777838 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01347 4 35134503 35146562 Rops4g01347 4 35134503 35146562 ECH
Rops8g02177 8 50355327 50363652 Rops4g01347 4 35134503 35146562 PCT