Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02161 ATGGCTATATTGAAGAGCTATAGCAGCGTTTGCTTCAGTGGAACCGGTTTTCCGGTTTGCCCCTCCAATGTCACTAATAATAAAAACACCAGGAACTCATACTGGAAGCCTACACAAGCAGCTGTGAAACCCAATTTCCACCTCCCAATGCGCAGTTTTGAGTTGAAAAATAGGACTTCTGTGGAGGACATAAAGTGCCTGAGATTGATTACTGCCGTTAAAACTCCATACCTACCTGATGGTCGTTTTGATCTTGAAGCATATGATGACTTGGTGAATATGCAGATCGGAAATGGAGTTGAAGGTGTTATTGTTGGTGGCACAACCGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCACACACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAATTCCACCAGGGAAGCAATTCATGCCACCGAGCAGGGTTTTGCTGTTGGAATGCATGGTGCCCTTCACATAAACCCTTACTACGGCAAAACCTCCTTGGATGGTATGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGGCCCACGATCATATATAATGTGCCTTCGCGGACTGGTCAAGACATTCCTCCTCATGTAATTCAAACCTTAGCTCAAAGTACTAGCTTGGCTGGTGTCAAGGAATGTGTGGGAAATGACCGGATCCAACAGTATACAAGTAATGGAATTGTTGTTTGGAGTGGAAACGATGATCAATGTCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGCAAGCAACCTGATTCCTGGTTTAATGCATGAACTCATGTTTGGGGGCAAAAATCCTACCCAGAATTCTAAGCTCTTGCCTTTGATCGACTGGCTTTTCCACATGCCAAATCCAATTGGTTTGAACACGGCTCTTGCTCAACTTGGAGTTGTCAGGCCAGTTTTCAGGCTACCCTTTGTACCTCTCCCTGTGGAGAAAAGGATAGAATTTGCCAATTTGGTTAAGAAAATTGGCCGAGAGCATTTTGTTGGAACTAAAGATGTTGAGGTTCTTGATGATGATGATTTTTTCTTGGTTAGTCGTTATTAG 1101 0.436 MAILKSYSSVCFSGTGFPVCPSNVTNNKNTRNSYWKPTQAAVKPNFHLPMRSFELKNRTSVEDIKCLRLITAVKTPYLPDGRFDLEAYDDLVNMQIGNGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQTLAQSTSLAGVKECVGNDRIQQYTSNGIVVWSGNDDQCHDARWGYGATGVISVASNLIPGLMHELMFGGKNPTQNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVEKRIEFANLVKKIGREHFVGTKDVEVLDDDDFFLVSRY* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02161 366 Gene3D Aldolase class I 60 366 IPR013785 -
Rops8g02161 366 SMART DHDPS_2 65 342 IPR002220 GO:0016829
Rops8g02161 366 NCBIfam 4-hydroxy-tetrahydrodipicolinate synthase 69 339 IPR005263 GO:0008840|GO:0009089
Rops8g02161 366 SUPERFAMILY Aldolase 69 341 - -
Rops8g02161 366 ProSitePatterns Dihydrodipicolinate synthase signature 1. 102 119 IPR020624 GO:0016829
Rops8g02161 366 ProSitePatterns Dihydrodipicolinate synthase signature 2. 195 225 IPR020625 GO:0016829
Rops8g02161 366 PRINTS Dihydrodipicolinate synthase signature 190 207 IPR002220 GO:0016829
Rops8g02161 366 PRINTS Dihydrodipicolinate synthase signature 99 120 IPR002220 GO:0016829
Rops8g02161 366 PRINTS Dihydrodipicolinate synthase signature 167 183 IPR002220 GO:0016829
Rops8g02161 366 PRINTS Dihydrodipicolinate synthase signature 135 153 IPR002220 GO:0016829
Rops8g02161 366 CDD DHDPS 68 338 IPR005263 GO:0008840|GO:0009089
Rops8g02161 366 PANTHER DIHYDRODIPICOLINATE SYNTHASE 53 350 IPR002220 GO:0016829
Rops8g02161 366 Pfam Dihydrodipicolinate synthetase family 67 340 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02161 Rops-Chr8 50048825 50051744 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02161 K01714 - gmx:100788930 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02161 8 50048825 50051744 Rops8g02161 8 50048825 50051744 ECH
Rops8g02161 8 50048825 50051744 Rops4g01301 4 34444375 34446206 PCT