Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02102 ATGAACATAAAGTTGAGTTTTTTGTTGTGTGTTTGGGTTTTTTTGCTGTTGGGGTGTTGTTTTGGTAGGTTTGTGGTGGAGAAGAACAGCTTGAAGATCACTTCTCCGAAATCATTGAAGGGTTCATATGAATGTGCAATTGGGAATTTTGGGGTCCCTAAGTATGGAGGAATCATGGTTGGTTCTGTGGTGTACCCAAAGGTGAATCAGAAAGGATGCAAGGACTTCAGTGACTTCAGTGCTTCATTTCAGTCCAAGCCCGGAGGGTACCCCACCTTTCTCCTTGTTGATCGTGGAGATTGCTACTTCACTTTGAAGGCGTGGAATGCACAAAATGGTGGAGCAGCAGCTATTCTTGTAGCTGATGACAGGGAAGAAACATTGATCACCATGGACACTCCTGAAGAAGGGAATGTAGCAAATGATGATTATGTGGGAAAGATTAGCATTCCTTCTGCTCTTATCAGCAAATCCTTGGGGGATAGCATCAAGGAGGCTCTCTCAAAGGGGGAGATGGTTTCCGTAAACCTTGATTGGAGAGAGGCTCTTCCACATCCTGATGAGAGAGTTGAGTATGAGTTATGGACAAATAGCAATGATGAGTGTGGACCAAAGTGCGACAATCTAATTAATTTTGTGAAGAGCTTTAAAGGGGCAGCTCAGCTACTTGAGCAGAAGGGTTTCACTCAGTTTACCCCTCACTATATAACTTGGTATTGCCCTGAAGCATTTCTCTTAAGCAAACAGTGCAAGTCTCAGTGCATAAACAATGGAAGGTACTGTGCTCCAGACCCTGAGCAAGATTTCAGTAGAGGGTATGATGGCAAAGATGTCGTTGTTCAAAACTTACGCCAAGCTTGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAGCCTTGGAAATGGTGGGACTATGTGACTGACTTTTCAATCCGTTGCCCCATGAAAGAGAATAAATACACAGAAGAGTGCTCAGATCAAGTTATTAAATCTCTTGGTGTTGATCTGAAGAAGATTAAAGACTGTGTTGGGGATCCTCATGCAGATGTTGTAAACCCTGTTCTTAAGGCTGAACAGGATGCACAGATTGGTAAAGGCTCTCGTGGAGATGTTACAATACTGCCTACTCTCGTTATAAACAATAGACAGTATAGAGGTCAGTTGTCAAAACCAGCAGTTCTCAAGGCAATCTGTGCAGGTTTCCAAGAGACCACTGAACCATCAATTTGCTTAACTTCAGACATGGAAACAAATGAGTGTTTGGAAAACAATGGTGGCTGTTGGCGGGACAAACCTTCTAATATTACTGCATGCAGGGATACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTTCAAAATGTGAAGTTTGTTGGTGATGGGTATACCCATTGTGAAGCTTCAGGAGTCTTGAGTTGTGAATTCAACAATGGAGGTTGTTGGAAGGGAGCCCGAGGTGGCAGGGTTTACTCTGCTTGTATTGATGACTATAGAAAAGGTTGTACTTGTCCACCTGGGTTCAGAGGTGATGGAGTCAAGTTATGTGAAGATATTGATGAGTGCAAAGAGAAATCGGCCTGCCAGTGCCCTGAGTGCACATGCAAAGATACCTGGGGGAGTTATGAGTGCAGATGCAGTAAGGGTTTGTTCTACTCACGAGAAAATGACGTGTGTATTGGTAATTATGCTGCTTCGGTGAATATTTGGTGGATTATCCTCATCCTGGTTGTTGCTGTTTCCGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCCGAGATACGGGCAATTATGGCCCAGTACATGCCTTTGGATAATCAACCTGATGTCTCCAATCGAATTCATCATGATATCTAG 1866 0.4314 MNIKLSFLLCVWVFLLLGCCFGRFVVEKNSLKITSPKSLKGSYECAIGNFGVPKYGGIMVGSVVYPKVNQKGCKDFSDFSASFQSKPGGYPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDREETLITMDTPEEGNVANDDYVGKISIPSALISKSLGDSIKEALSKGEMVSVNLDWREALPHPDERVEYELWTNSNDECGPKCDNLINFVKSFKGAAQLLEQKGFTQFTPHYITWYCPEAFLLSKQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFFKVANESGKPWKWWDYVTDFSIRCPMKENKYTEECSDQVIKSLGVDLKKIKDCVGDPHADVVNPVLKAEQDAQIGKGSRGDVTILPTLVINNRQYRGQLSKPAVLKAICAGFQETTEPSICLTSDMETNECLENNGGCWRDKPSNITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGVLSCEFNNGGCWKGARGGRVYSACIDDYRKGCTCPPGFRGDGVKLCEDIDECKEKSACQCPECTCKDTWGSYECRCSKGLFYSRENDVCIGNYAASVNIWWIILILVVAVSGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPDVSNRIHHDI* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02102 621 Gene3D Glutaredoxin 267 399 - -
Rops8g02102 621 Pfam PA domain 61 163 IPR003137 -
Rops8g02102 621 SUPERFAMILY PA domain 93 181 IPR046450 -
Rops8g02102 621 Gene3D Laminin 464 558 - -
Rops8g02102 621 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 10 611 - -
Rops8g02102 621 FunFam vacuolar-sorting receptor 1 409 465 - -
Rops8g02102 621 SUPERFAMILY EGF/Laminin 512 558 - -
Rops8g02102 621 Gene3D Laminin 409 455 - -
Rops8g02102 621 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Rops8g02102 621 FunFam Vacuolar-sorting receptor 1 21 186 - -
Rops8g02102 621 ProSitePatterns Calcium-binding EGF-like domain signature. 516 542 IPR018097 GO:0005509
Rops8g02102 621 Gene3D - 21 186 - -
Rops8g02102 621 CDD EGF_CA 516 547 - -
Rops8g02102 621 SMART egfca_6 516 558 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02102 Rops-Chr8 49089089 49097641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02102 8 621 Miscellaneous Gene Families AT3G52850 71.935 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02102 - - gmx:100807514 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02102 8 49089089 49097641 Rops8g02102 8 49089089 49097641 ECH
Rops8g02102 8 49089089 49097641 Rops4g00747 4 19777714 19792146 PCT