Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00747 ATGAAAATGAGGACAAAGCTAAGTTTTTTGTGGTGTGTTTGGATTTTTCTTTGTGGGTCTTGTGTGGGAAGGTTTGTAGTGGAAAAGAACAATTTGAAAATCACTTCTCCAAAATCATTGAGGGGTATATATGAATGTGCAATTGGGAATTTTGGGGTGCCCAAGTATGGAGGAACCATGATTGGCACTGTGGTGTACCCAAAGTTGAATCAGAATGGATGCAACAGCTTTAATGATGCAGATACCTCCTTGAGTTCCAAGCCCGGAAGCTTCCCCACCTTTGTTCTTGTTGATCGGGGAGATTGCTACTTCACTTTAAAGGCGTGGAATGCTCAGAAAGGTGGAGCAGCAGCTGTTCTTGTTGCAGATGATAGGATAGAACCGTTGATCACCATGGACACTCCAGAAGAAGGGAATGGTTCAAATGATGATGATTATATTGAAAAGATTAGCATTCCTTCTGCCCTTATCAGCAAACCACTAGGAGATAGCATCAAAATGGCTCTCTCTAGTGGGGCTATGGTTAATGTAAATCTTGATTGGAGAGAGGCTCTTCCACACCCTGATGAGAGAGTTGAGTATGAGTTTTGGACAAGTAGCAATGATGAATGTGGGCCAAAGTGTGAGAGTGAAATTAATTTTGTGAAGAGTTTTAAGGGGGCAGCCCAACTACTTGAACAAAAAGGGTTCACTAAGTTTACCCCTCACTATATAACTTGGTATTGCCCAGAAGCATTTATCTTAAGCCAACAGTGCAAGTCTCAGTGCATAAATAATGGGAGGTACTGTGCACCAGATCCTGAGCAAGATTTAAGTAGAGGGTATGATGGAAAAGATGTTGTTATTCAAAACTTACGTCAAGCTTGCTTCTTTAAAGTGGTAAATGAAAGTGGAAAGCCATGGAAATGGTGGGACTACGTGACTGACTTTTCAATCCGCTGCCCAATGAGAGAGAATAAGTACACTGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGCTGTTGATGTAAAGAAGATTAAAGACTGTGTTGGGGATCCTCGTGCTGATGTTGAAAATCCTATTCTTAAGGCTGAACAGGATGCACAGATTGGCAATGGTCCTCGTGGTGATGTTACTATATTGCCTACTCTTGTTATAAACAACAGACAGTATCGAGGTAAGCTGTCAAAAGCATCAGTACTCAAAGCAATCTGTGCAAGTTTCCAAGAGACCACTGAGCCACCAATTTGTTTAACTCCAGACATGGAAACAAACGAGTGTTTGACAAACAATGGTGGTTGTTGGCAGGACAAATCCACTAACATTACTGCATGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTACAAAATGTAAAGTTTGCTGGCGATGGATATACCCACTGTGAAGCCACAGGAGCCTTGAGGTGTGCAGTCAACAATGGAGGTTGTTGGAAGGGGTCCAAAGGTGGCAGAACTAACTCTGCTTGTGTCGATGACCACACAAAAGGTTGTAAGTGTCCACCTGGATTCAGGGGTGATGGAGTCCACTCCTGTGAAGATGTGGATGAGTGCAAAGAGAAACTGGCATGCCAGTGCCCAGAGTGCAACTGCAAAAATACCTGGGGGAGTTATGAATGCAGCTGTAGTAATGGTTTGTTCTACATGCGAGAAAATGACATGTGTATTGGTAAATATGCCGCTTCAGTGTCTAGCGGGGGCTTTGTTTGGATGGTTATTCTTATCTTGGCTCTTGCGGGCGCTGGGGGATATGCATTTTACAAGTACAGGATCCGGAGATATATGGATTCTGAGATAAGGGCAATTATGGCCCAATACATGCCCTTGGATAATCAACCGGAGAACTCTAATCAAATTCAGCAAGATGTGTAG 1884 0.4289 MKMRTKLSFLWCVWIFLCGSCVGRFVVEKNNLKITSPKSLRGIYECAIGNFGVPKYGGTMIGTVVYPKLNQNGCNSFNDADTSLSSKPGSFPTFVLVDRGDCYFTLKAWNAQKGGAAAVLVADDRIEPLITMDTPEEGNGSNDDDYIEKISIPSALISKPLGDSIKMALSSGAMVNVNLDWREALPHPDERVEYEFWTSSNDECGPKCESEINFVKSFKGAAQLLEQKGFTKFTPHYITWYCPEAFILSQQCKSQCINNGRYCAPDPEQDLSRGYDGKDVVIQNLRQACFFKVVNESGKPWKWWDYVTDFSIRCPMRENKYTEECSDQVIKSLAVDVKKIKDCVGDPRADVENPILKAEQDAQIGNGPRGDVTILPTLVINNRQYRGKLSKASVLKAICASFQETTEPPICLTPDMETNECLTNNGGCWQDKSTNITACRDTFRGRVCECPIVQNVKFAGDGYTHCEATGALRCAVNNGGCWKGSKGGRTNSACVDDHTKGCKCPPGFRGDGVHSCEDVDECKEKLACQCPECNCKNTWGSYECSCSNGLFYMRENDMCIGKYAASVSSGGFVWMVILILALAGAGGYAFYKYRIRRYMDSEIRAIMAQYMPLDNQPENSNQIQQDV* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00747 627 SUPERFAMILY PA domain 94 172 IPR046450 -
Rops4g00747 627 FunFam Vacuolar-sorting receptor 1 523 560 - -
Rops4g00747 627 FunFam vacuolar-sorting receptor 1 411 467 - -
Rops4g00747 627 Gene3D Laminin 473 560 - -
Rops4g00747 627 Gene3D Laminin 412 457 - -
Rops4g00747 627 Gene3D - 22 188 - -
Rops4g00747 627 SMART egfca_6 518 560 IPR001881 GO:0005509
Rops4g00747 627 FunFam Vacuolar-sorting receptor 1 22 188 - -
Rops4g00747 627 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 9 619 - -
Rops4g00747 627 Pfam PA domain 62 164 IPR003137 -
Rops4g00747 627 CDD EGF_CA 518 549 - -
Rops4g00747 627 ProSitePatterns Calcium-binding EGF-like domain signature. 518 544 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00747 Rops-Chr4 19777714 19792146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00747 6 627 Miscellaneous Gene Families AT3G52850 70.513 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00747 - - gmx:100815266 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02102 8 49089089 49097641 Rops4g00747 4 19777714 19792146 PCT