Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02087 ATGTGCACTGGTACTGAATCTCGAGGAATGGTAGATGGTGACCTTGTGATTTCAAAGGTGGGAGGAGAATACAATGAGGGAGGAATAAGAAACAGTAGCTGTGGTAGATTCATTCAAGGTCTTCTTCACCTCTTAACAACTCTTCTTCCTAGTCCTCTCTCTGAGGTGAAAGAAGAGTTGAAATTGATAGCAAAAATTTCATGTCCAATAATGATGACTAATGTGCTCTTGTACTCTAGATCTGCAATTTCAATGCTCTTCTTGGGTCGCCAAGGGAAAGTAGAGTTTGCTGGAGGTGCACTTGCAATTGGGTTTGCCAACATTACTGCTAATTCATTACTCAAAGGTCTTACTATGGGAATGGAACCAATTTGTAGTCAAGCATATGGAGCAAAGAGATGGCCAATTCTAAGCCAAACCTTTTTCAAAACCTTGTGTCTCCTCCTTATTGTTGCCATACCCATTTCACTATTATGGCTAAATATGACACCCCTCCTTCAGTGGCTAGGCCAAGACCCTGAAGTCACAGAGGTTGCACAAGTTTACTTGGTTTTCTCTATTCCAGAATTGCTTGCTCAGGCTCATCTTAATCCATTAAGGTCTTTCTTAAGAACACAAGGGTTAACAGCACCATTAACCGTAGCTGCTTCTTTTGCTGCCATTTTGCACCTTCCCATCATTTATTTCTTGGCTACATATCTTAAGCTAGGTGTAAAAGGTATTGCACTAGCTACTGGTTTGAATTCCATTAACATGATTCTAGGCCTGTTGATTTATCTTGTTCTGTCAAAGAAACCACTAAAACCTTGGGAAGGAGCTACAATTCGCTCAGCCTTTCATGGTTGGAAACCATTACTAAGTCTAGCATTGCCTAGTTGCATTTCAGTGTGCTTGGAGTGGTGGTGTTATGAGATAATGCTCTTTCTATGTGGATTGTTAAGTAATCCACAAACCAATGTTGCTACCATGGGGGTGCTTATCCAAACAACAGGGTTCTTCTATGTGTTCCCATTTTCATTAAGTGCTGCATTGACTACAAGAATTGGTCACTCATTAGGTGCAGGGCAAGCTTCCAGAGCTCAAAGTACATCCATGATTGGCCTTTTCTTAGCATTTGCACTTGGGGTCTCAGCCTTTGTTTTCTTGATGTTTGTGAGGAAAGTGTGGGGGAAACTTTTCACAAATGAGACACAAATTATTGATATGGTCACAACTATACTTCCAATTTTGGGGTTATGTGAGGTTGGAAATTGGCCTCAAACAGCTGCATGTGGGATTTTAACAGGAACTGCACGTCCTTATGTGGGTGCAAGAATAAACTTGTGTGCATTTTACTTAATTGGATTGCCAATTTCTATTTTTGCTGCTTTCATATACACTTATCAATTGAGGGGTTTGTGGTTTGGAATGTTAGCAGCACAGATTTCTTGTTTTTGTATGATGGTGTATACTTTGATTCAAACAGATTGGGGGTACCAAACTAAGAGAGCTGAGCAACTAGCTCAGAGAACAATAGAAGAGGAAAGTGTGAATGATGAGGAAAGTGGGCTCCTTAATTCTGATTTGTGA 1569 0.4047 MCTGTESRGMVDGDLVISKVGGEYNEGGIRNSSCGRFIQGLLHLLTTLLPSPLSEVKEELKLIAKISCPIMMTNVLLYSRSAISMLFLGRQGKVEFAGGALAIGFANITANSLLKGLTMGMEPICSQAYGAKRWPILSQTFFKTLCLLLIVAIPISLLWLNMTPLLQWLGQDPEVTEVAQVYLVFSIPELLAQAHLNPLRSFLRTQGLTAPLTVAASFAAILHLPIIYFLATYLKLGVKGIALATGLNSINMILGLLIYLVLSKKPLKPWEGATIRSAFHGWKPLLSLALPSCISVCLEWWCYEIMLFLCGLLSNPQTNVATMGVLIQTTGFFYVFPFSLSAALTTRIGHSLGAGQASRAQSTSMIGLFLAFALGVSAFVFLMFVRKVWGKLFTNETQIIDMVTTILPILGLCEVGNWPQTAACGILTGTARPYVGARINLCAFYLIGLPISIFAAFIYTYQLRGLWFGMLAAQISCFCMMVYTLIQTDWGYQTKRAEQLAQRTIEEESVNDEESGLLNSDL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02087 522 CDD MATE_eukaryotic 59 490 IPR045069 GO:0042910|GO:1990961
Rops8g02087 522 PANTHER MULTIDRUG RESISTANCE PROTEIN 55 490 - -
Rops8g02087 522 Pfam MatE 291 452 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Rops8g02087 522 Pfam MatE 69 228 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Rops8g02087 522 NCBIfam MATE family efflux transporter 69 467 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02087 Rops-Chr8 48736829 48743842 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02087 K03327 - gmx:100816717 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02087 8 48736829 48743842 Rops4g01148 4 30974471 30979999 PCT