Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01880 ATGAGCATAACAGAGGTTGATTCTCATGATGAGGAGGGGAAGGAAGAGGGTCCTTCTTCTGCTTTGCTTGACTCTGGGAGTGAGAACAATTCAAGGCCTCGTCGAATTGCTCTCTTTGTTGAGCCTTCTCCCTTTGCATATGTCTCAGGATACAAGAATCGGTTTCAGAATTTTATTAAATGCCTTCGTGAAATGGGAGATGAGGTGATGGTTGTGACAACACATAAAGGGGTGCCCCAGGAATTTTATGGAGCCAAATTAATCGGATCTTGGAGCTTTCCCTGCCCTTGGTATCAGAATGTACCCCTCTCCTTGGCACTTAGTCCAAGAATAATTTCAGAGGTAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATGGTTTTTGGTGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGTGTACATTCCAAGATATACTTTTAGTTGGCTGGTGAAACCCATGTGGTTGATAATAAAATTTCTTCACAGAGCAGCTGATCTGACTCTAGTTCCATCGGCTGCCATTGGGAGGGATCTCCAAGCAGCTAGAGTAACAGCAGCTAACAAGATTCGTCTTTGGAGCAAGGGCGTTGATTCTGAAAGTTTCCATCCTCGGTACCGCTCACATGAAATGCGATTAAGACTAAGCAATGGTGAACCTGAGAAACCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTGAAAAGGCTCATGGATAGGCTTCCTGAAGCGCGAATTGCTTTCATTGGAGATGGACCTTACAGGGAGGAGCTGGAGAAAATGTTTGAAGGTATGCCAGCAGTATTCACTGGAATGTTAGGAGGGGAAGAACTTTCTCAAGCATATGCCAGTGGAGATGTATTTGTCATGCCTTCAGAGTCAGAGACACTTGGACTTGTTGTTTTGGAGGCCATGTCTTCAGGGATCCCTGTGGTGGGAGCACGTGCTGGAGGCATTCCAGATATAATACCTGCAGATCAAGAGGGTAAAACTGGATATCTCTATAATCCAGGAGATCTTGAAGATTGCTTGAGTAAATTGATGCCCCTTTTGTTCAACCAAGAGTTGAGAGAAACCATGGGAAAAGCTGCACGCAATGAGATGGAGAAGTATGATTGGAAGGCAGCCACAAGAAAGGTTCGCAATGAACAATACAATGCTGCCATTTGGTTCTGGCGCAAGAAAAGAGCTCAACTATTGAGACCCTTTCAATGGCTGGCAAAACGTTTTTTCCCATCACCACAAGTCAACTATAGGTGA 1326 0.4434 MSITEVDSHDEEGKEEGPSSALLDSGSENNSRPRRIALFVEPSPFAYVSGYKNRFQNFIKCLREMGDEVMVVTTHKGVPQEFYGAKLIGSWSFPCPWYQNVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLIIKFLHRAADLTLVPSAAIGRDLQAARVTAANKIRLWSKGVDSESFHPRYRSHEMRLRLSNGEPEKPLIVHVGRLGVEKSLDFLKRLMDRLPEARIAFIGDGPYREELEKMFEGMPAVFTGMLGGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPADQEGKTGYLYNPGDLEDCLSKLMPLLFNQELRETMGKAARNEMEKYDWKAATRKVRNEQYNAAIWFWRKKRAQLLRPFQWLAKRFFPSPQVNYR* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01880 441 Pfam Glycosyl transferases group 1 236 388 IPR001296 GO:0016757
Rops8g01880 441 Gene3D Glycogen Phosphorylase B; 35 230 - -
Rops8g01880 441 FunFam Sulfoquinovosyl transferase SQD2 35 230 - -
Rops8g01880 441 PANTHER SULFOQUINOVOSYL TRANSFERASE SQD2 31 418 - -
Rops8g01880 441 CDD GT4-like 35 407 - -
Rops8g01880 441 Gene3D Glycogen Phosphorylase B; 231 393 - -
Rops8g01880 441 FunFam sulfoquinovosyl transferase SQD2 231 393 - -
Rops8g01880 441 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 36 403 - -
Rops8g01880 441 MobiDBLite consensus disorder prediction 1 18 - -
Rops8g01880 441 MobiDBLite consensus disorder prediction 1 30 - -
Rops8g01880 441 Pfam Glycosyltransferase Family 4 53 216 IPR028098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01880 Rops-Chr8 42702246 42707002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01880 1 349 Glycosyltransferase AT5G01220 81.089 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01880 K06119 - gmx:100807850 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01880 8 42702246 42707002 Rops8g01880 8 42702246 42707002 ECH
Rops8g01880 8 42702246 42707002 Rops4g00944 4 24785123 24790356 PCT