Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01770 ATGGCAGAAGCGAAGTTGAGCTTCAAAGACAAAAGATGGTCACTACATGGAATGACTGCTCTAGTGACCGGAGGAACCCGAGGCATAGGGCATTCGATTGTTGAAGAATTAGCAGAATTTGGGGCAGCTGTTCATATATGTGCTCGTAACCAAGAAGATATTAACAAATGTTTGGAAGAGTGGAAAAGCAAAGGACTCAACGTAACGGGATCAGTATGTGATTTACTGTGTCATGACCAGCGTAAAAGATTAATGGAAATAGTTTCCTCCATCTTTCACGGGAAGCTCAACATTGTTGTAAACAATGCTGCGACAAATATAACGAAGAAAATAATAGATTACACTGCCGAAGATATATTAACTATTATGGGTACCAATTTCGAGGCTGCTTATCATTTGTGTCAACTTGCACACCCACTTCTTAAAGCATCTGGATGTGGGAGCATTGTATTCATTTCGTCCATTGCAGGTCTGAAAGCTCTTCCCGTACTATCTGTTTATGCAGCCTCTAAAGGAGCAATGAATCAATTCACCAAGAACTTAGCATTGGAATGGGCAAAGGATAATATTCGTGCAAATGCTGTGGCACCTGGACCTGTTATGACTTCACTTCTGGAGTCTTTAATGGAATCTCCCGAAGGGGATGGAGCTGTGGATGGTATAGTGTCTCAAACACCTGTTGGTCGAATGGCAGAGCCTAAAGAGATATCAGCACTAGTTGCCTTTCTTTGCCTTCCGGTTGCATCGTACATCACTGGACAGGTTATAGCTGTAGATGGGGGTTACACTTCTTAG 795 0.4252 MAEAKLSFKDKRWSLHGMTALVTGGTRGIGHSIVEELAEFGAAVHICARNQEDINKCLEEWKSKGLNVTGSVCDLLCHDQRKRLMEIVSSIFHGKLNIVVNNAATNITKKIIDYTAEDILTIMGTNFEAAYHLCQLAHPLLKASGCGSIVFISSIAGLKALPVLSVYAASKGAMNQFTKNLALEWAKDNIRANAVAPGPVMTSLLESLMESPEGDGAVDGIVSQTPVGRMAEPKEISALVAFLCLPVASYITGQVIAVDGGYTS* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01770 264 Gene3D - 2 264 - -
Rops8g01770 264 PANTHER TROPINONE REDUCTASE 11 263 IPR045000 GO:0016491
Rops8g01770 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
Rops8g01770 264 Pfam Enoyl-(Acyl carrier protein) reductase 26 263 - -
Rops8g01770 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Rops8g01770 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Rops8g01770 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Rops8g01770 264 FunFam Short-chain dehydrogenase reductase 4 264 - -
Rops8g01770 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 263 IPR036291 -
Rops8g01770 264 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Rops8g01770 264 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Rops8g01770 264 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Rops8g01770 264 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Rops8g01770 264 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Rops8g01770 264 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01770 Rops-Chr8 39704632 39708073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01770 10 263 Miscellaneous Gene Families AT2G29290 56.299 4.08e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01770 K08081 - gmx:100786456 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01770 8 39704632 39708073 Rops8g01770 8 39704632 39708073 ECH
Rops11g03561 11 68043329 68051381 Rops8g01770 8 39704632 39708073 ECH