Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03561 ATGGCAGAAGCAGGTGGCAGCAACAGAGAACCAAAATGGTTCCTCAGTGGAATGACAGCACTTGTCACTGGTGGCACACGTGGAATTGGGCATGCCATAGTGAATGATCTAGCTGCTTTTGGTGCTGCTGTACACACTTGTTCCAGAACCCAAACTGATCTCAATAAGTGCTTACAAGAATGGAAAAGTCAAGGCTTTTTGGTTACTGGGTCTGTCTGTGATGTGTCCTCTCCACCCCAGAGAGAGAAGCTCATTCAAGAAGTGGCATCCACCTTCAATGGCAAGCTCAACATCTTTGTAAACAATGCTGGAGCAAACATTGGAAAGCCAACAATTGAGGTCACTGCTGAAGAATATTCAGAGCTGGTGGCAGTTAATTTAGATTCTGCATTCCATCTAAGCCAACTTGCATATCCTCTTCATTTCATCTATTGCAGGTGTGGTCTCAAACAAATGGCAGCTGCAGAGAGCAGCACCAACACCACAGCCTCAAGATGGTCCCTCAATGGAATAACTGCTCTTGTCACCGGTGGAACTCGTGGAATTGGGCATGCCATAGTGGAGGATTTATGTGGGTTTGGTGCCACTGTCCACACTTGTTCTAGAAACCAAGCAGAGCTGAATAAGTGCTTGGATGAATGGAGGAGTAAAGGCTTTTTGGTTTCTGGGTCAGTGTGTGATGTGACATCTAGAGACCAAAGAGAGAAGCTCATTCAGGAAGTGACCTCCACCTTCAATGGCAAGCTTAACATTTATGTGAACAATGTTGGAGCAAACTTTAGGAAGCCAACTATTGAGTACACTGCTGATGACTATTCACAAATGATGGCAATCAATTTAGAATCTGCACACCATCTGTGCCAACTTACATATCCACTTCTAAAAGCATCTGGAATGGGAAGTATTGTGTTCATTTCATCTATTGCTGGTGTGGTGAGCTTGGGAACTGGATCAGTCTATGCAGCATGTAAAGCTGCAATCAATCAGCTTACAAAATATCTGGCTTGTGAATGGGCAAAAGACAGCATAAGGAGCAATTGTGTTGTTCCAGCTACCACCAATACACCACTTGTAGAACATCTGCTTCGCAACCGGAAGTATATAGATGAAATGTTGGCTCGAACTCCTCTTGGGCGCATTGCAGAAGCTCGAGAAGTTTCATCCTTGGTGGCTTTTCTTTGTCTGCCTGCTGCCTCTTACATCACAGGACAGGTTATTTGTGTTGATGGAGGATTAACAGTGAATGGATTTCAGCCAAGCATGAGAATAACATGA 1275 0.4447 MAEAGGSNREPKWFLSGMTALVTGGTRGIGHAIVNDLAAFGAAVHTCSRTQTDLNKCLQEWKSQGFLVTGSVCDVSSPPQREKLIQEVASTFNGKLNIFVNNAGANIGKPTIEVTAEEYSELVAVNLDSAFHLSQLAYPLHFIYCRCGLKQMAAAESSTNTTASRWSLNGITALVTGGTRGIGHAIVEDLCGFGATVHTCSRNQAELNKCLDEWRSKGFLVSGSVCDVTSRDQREKLIQEVTSTFNGKLNIYVNNVGANFRKPTIEYTADDYSQMMAINLESAHHLCQLTYPLLKASGMGSIVFISSIAGVVSLGTGSVYAACKAAINQLTKYLACEWAKDSIRSNCVVPATTNTPLVEHLLRNRKYIDEMLARTPLGRIAEAREVSSLVAFLCLPAASYITGQVICVDGGLTVNGFQPSMRIT* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03561 424 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 247 258 IPR002347 -
Rops11g03561 424 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 320 339 IPR002347 -
Rops11g03561 424 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 300 308 IPR002347 -
Rops11g03561 424 FunFam Short-chain dehydrogenase reductase 155 418 - -
Rops11g03561 424 PRINTS Glucose/ribitol dehydrogenase family signature 376 396 IPR002347 -
Rops11g03561 424 PRINTS Glucose/ribitol dehydrogenase family signature 172 189 IPR002347 -
Rops11g03561 424 PRINTS Glucose/ribitol dehydrogenase family signature 294 310 IPR002347 -
Rops11g03561 424 PRINTS Glucose/ribitol dehydrogenase family signature 247 258 IPR002347 -
Rops11g03561 424 PRINTS Glucose/ribitol dehydrogenase family signature 341 358 IPR002347 -
Rops11g03561 424 PRINTS Glucose/ribitol dehydrogenase family signature 320 339 IPR002347 -
Rops11g03561 424 Gene3D - 9 152 - -
Rops11g03561 424 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 140 IPR036291 -
Rops11g03561 424 Pfam short chain dehydrogenase 19 139 IPR002347 -
Rops11g03561 424 Pfam Enoyl-(Acyl carrier protein) reductase 179 413 - -
Rops11g03561 424 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 171 415 IPR036291 -
Rops11g03561 424 Gene3D - 153 417 - -
Rops11g03561 424 PANTHER TROPINONE REDUCTASE 165 416 IPR045000 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03561 Rops-Chr11 68043329 68051381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03561 165 419 Miscellaneous Gene Families AT2G29290 62.257 9.16e-114 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03561 K08081 - gmx:100775806 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03561 11 68043329 68051381 Rops11g03561 11 68043329 68051381 ECH
Rops11g03561 11 68043329 68051381 Rops8g01770 8 39704632 39708073 ECH