Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01195 ATGGATCAATTAGGCCAGATATTTCCTTGTAATAATGAGTATGCTGTTGTGACAGGAGCAAATAAAGGGATTGGTTATGGGATATGTAAGAAGTTGGCTTCAAGTGGGATTGTGGTGGTGCTAACAGCTAGAAATGAAGAGAGGGGCTTGCAAGCTGTTGAAAGGCTCAAAGAGTTTGGTTTCTGTGACCACCTGATTTTTCATCAGCTCGATGTGGATGACCCTGCTAGCATTGCTACCTTAGCTGATTTCATCAAAACCAAATTTGGGAAACTTGATATCCTGGTGAATAATGCAGGTGTCACTGGGGGAAAATTAGTTGACGGTGATGCTTTACTTAGAAAGAGAAACGGTGCAAAAATTGATTGGAGTGAAGTAGGGTATCAAACCTATGAGTTAGCTGAAAAATGTGTGGAAACAAACTTCTATGGAGTAGAAAGAGTAACAGAAGCTCTTGTTCCCCTTCTCATGCTATCCACTTCTCCAAGAGTTGTCAACATTTCCTCCAGAGCAGGACTCTTGAAGAATATACCAAATGAGTGGGCTAGAACAGTGTTTAATGACATTGAAAACATCACAAGAGAAAAAATAGATGAGGTGCTTAAGGAGTTTCAAAAAGACTACAGAGAAGGATCATTGGAGATCAAAGGTTGGCCAAATTTTGCTTCTGCTTATACAATGTCAAAAGCAGCTTTAAATGCTTATACAAGGATAATGGCAAAGAAATACCCTCATTTTCACATAAACTCTGTGTGCCCTGGCTTTGTCAAGACTGATATGAACCACAACACTGGAAATTTAAGCATTGATGAAGGTGCTGAAACTCCTGTTATGTTGGCACTGTTGCCAAATAATGGTCCTTCTGGCTGTTTCTTTTATCAGGGTGAAGTAATACCCTTTTGA 903 0.3976 MDQLGQIFPCNNEYAVVTGANKGIGYGICKKLASSGIVVVLTARNEERGLQAVERLKEFGFCDHLIFHQLDVDDPASIATLADFIKTKFGKLDILVNNAGVTGGKLVDGDALLRKRNGAKIDWSEVGYQTYELAEKCVETNFYGVERVTEALVPLLMLSTSPRVVNISSRAGLLKNIPNEWARTVFNDIENITREKIDEVLKEFQKDYREGSLEIKGWPNFASAYTMSKAALNAYTRIMAKKYPHFHINSVCPGFVKTDMNHNTGNLSIDEGAETPVMLALLPNNGPSGCFFYQGEVIPF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01195 300 PRINTS Glucose/ribitol dehydrogenase family signature 156 172 IPR002347 -
Rops8g01195 300 PRINTS Glucose/ribitol dehydrogenase family signature 225 244 IPR002347 -
Rops8g01195 300 PRINTS Glucose/ribitol dehydrogenase family signature 14 31 IPR002347 -
Rops8g01195 300 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Rops8g01195 300 PRINTS Glucose/ribitol dehydrogenase family signature 244 261 IPR002347 -
Rops8g01195 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 225 244 IPR002347 -
Rops8g01195 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 170 IPR002347 -
Rops8g01195 300 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Rops8g01195 300 FunFam (+)-neomenthol dehydrogenase 9 300 - -
Rops8g01195 300 Pfam Enoyl-(Acyl carrier protein) reductase 215 265 - -
Rops8g01195 300 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 14 297 - -
Rops8g01195 300 CDD carb_red_PTCR-like_SDR_c 13 300 IPR045313 GO:0016616
Rops8g01195 300 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 212 240 IPR020904 GO:0016491
Rops8g01195 300 Gene3D - 9 300 - -
Rops8g01195 300 Pfam short chain dehydrogenase 14 175 IPR002347 -
Rops8g01195 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 285 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01195 Rops-Chr8 26044822 26048016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01195 16 265 Acyl Lipid Metabolism Gene Families AT1G24360 25.296 4.32e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01195 K15095 - gmx:100789626 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01195 8 26044822 26048016 Rops8g01195 8 26044822 26048016 ECH
Rops8g01195 8 26044822 26048016 Rops4g01445 4 36833792 36839685 PCT