Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01445 ATGGGAGAAGAAGCGAAAAGGTATGCGGTAGTGACAGGAGCTAATAAGGGGATTGGCTATGGGATATGCAAGAAATTGGGTTCACTTGGCATCATGGTGGTGCTTACAGCAAGAAATGAGAAAAGGGGTTTGGAAGCAGTGGAAACATTGAAAGAATTTGGCCTCTCAGATTTTGTGGTTTATCATCAACTCGATGTGACTGACCCTTCCAGTGTTGCTTCTTTAGCACATTTCATCAAAACCCAATTTGGAAGACTTGATATCTTGGTGAACAACGCAGGTGTTGCTGGGGGAATAGTGGATGGAGAGAATGTTCTTAGAAGGAACATACCAAATGACTGGGCAAGAGGAGTGTTCAGTGACATTGAAAACCTTACAAATGAAAAACTTGATGACGTGCTTAGAGAGTTTCTGAAAGATTACAAAGAAGGATCATTGAAAACCAAAAACTGGCCACCTGTTGTTTCTGGTTACACCATGTCAAAAACTGCTTTAAATGCTTACACAAGGATGCTAGCCAACAAGTTCCCTCATTTTCGCATTAATTGTTTATGCCCTGACTTTGTCAAGACTGATATAAACCAGAATACAGGCGTTTTAAGCATTGATGACGGTGCTGAAGGTCCTCTTAAGCTAGCATTGTTGCCTGATAATGGTCCATCTGGCCTCTTTTTTTCAAAGGATGAAGTGATTTCCTTTTGA 702 0.4103 MGEEAKRYAVVTGANKGIGYGICKKLGSLGIMVVLTARNEKRGLEAVETLKEFGLSDFVVYHQLDVTDPSSVASLAHFIKTQFGRLDILVNNAGVAGGIVDGENVLRRNIPNDWARGVFSDIENLTNEKLDDVLREFLKDYKEGSLKTKNWPPVVSGYTMSKTALNAYTRMLANKFPHFRINCLCPDFVKTDINQNTGVLSIDDGAEGPLKLALLPDNGPSGLFFSKDEVISF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01445 233 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 145 173 IPR020904 GO:0016491
Rops4g01445 233 PRINTS Glucose/ribitol dehydrogenase family signature 177 194 IPR002347 -
Rops4g01445 233 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Rops4g01445 233 PRINTS Glucose/ribitol dehydrogenase family signature 158 177 IPR002347 -
Rops4g01445 233 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Rops4g01445 233 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 109 230 - -
Rops4g01445 233 Gene3D - 3 233 - -
Rops4g01445 233 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 216 IPR036291 -
Rops4g01445 233 Pfam short chain dehydrogenase 8 96 IPR002347 -
Rops4g01445 233 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 IPR002347 -
Rops4g01445 233 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01445 Rops-Chr4 36833792 36839685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01445 7 207 Miscellaneous Gene Families AT4G05530 27.442 2.96e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01445 K15095 - gmx:100802560 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01445 4 36833792 36839685 Rops4g01445 4 36833792 36839685 ECH
Rops8g01195 8 26044822 26048016 Rops4g01445 4 36833792 36839685 PCT