Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01141 ATGTCGGAAATTGACATGGCAGTTATTAAACCTGAGATGATGAAGCCTTATATCTGGCTTCAGACTTCAGATGGTTCAATTCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCTCTGATTTGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAAAGGGTCAGTCCTGCAATATTGAGCTTAATTCTTGATTATTGCCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGGAACGGAAGTCTTATGATGAGAAATTCATTAGGATGGACACAAAGCAACTCTGTGAGTTGACATCTGCTGCAGACGGCCTTCAGTTGAAGCCATTGGTTGATCTTACGAGTCGTGCACTTGCTCGAATAATTGAAGGAAAATCTCCAGAGGAGATACGTGAGATATTTCATTTGCCTGATGATCTTACAGAGGAAGAGAAATTGGAGCCCTTGAAAAACACAACTGATGATCCAAGGATCAGGCTTTTGAACCGTTTGTATGCTAAAAAGAGGAAAGAACTAAAAGAGCGTGACAGGTTAAAGAATGTTGAAGTCGAAGAAGGGCATGTAGATGAACGTTCAGTTGATGAGCTTTTGTCTTTTATTAATGGAAATGATGGAGATCCGAAGGGGATTAAAACTTCCAAGAATAAAAAAAAGAACAGAAGAAAAAAAGAGCAACAGAAGAGCTCTTCTTTGAAGGAAGCTTCTGAACTGAATAAGGAGGTAAATGGTCATAATATCAGACACCAAGGTGCTGAAGCTGATAGAATTGCTCAGACCTCAAATTCACATACAGAAGATGACACTTTAGCTCATAAAGAGATCGATGATGGAGATATAGATGATGAGATTGATCCTGCACTGAAGGAAAAAATTGACAGGGAGGTGGAAGATTTTGCCCGCCGGTTAAATTCTGACTGGCCAGAGAGGATGCAAGAATTTTTATCATCAGGGCAAGAAAGGAATACAATGCTTTTCACTACCAATGGGAATGGTTTTCTAAGGAGAAATACTTGTATGCTTTCTCCATGTGTTCAGTGA 1065 0.3934 MSEIDMAVIKPEMMKPYIWLQTSDGSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQRVSPAILSLILDYCRFHQVPGRSNKERKSYDEKFIRMDTKQLCELTSAADGLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERDRLKNVEVEEGHVDERSVDELLSFINGNDGDPKGIKTSKNKKKNRRKKEQQKSSSLKEASELNKEVNGHNIRHQGAEADRIAQTSNSHTEDDTLAHKEIDDGDIDDEIDPALKEKIDREVEDFARRLNSDWPERMQEFLSSGQERNTMLFTTNGNGFLRRNTCMLSPCVQ* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01141 354 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Rops8g01141 354 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Rops8g01141 354 Coils Coil 170 190 - -
Rops8g01141 354 SUPERFAMILY POZ domain 16 80 IPR011333 -
Rops8g01141 354 SUPERFAMILY Skp1 dimerisation domain-like 90 160 IPR036296 GO:0006511
Rops8g01141 354 SMART skp1_3 15 116 IPR001232 GO:0006511
Rops8g01141 354 MobiDBLite consensus disorder prediction 235 260 - -
Rops8g01141 354 MobiDBLite consensus disorder prediction 207 289 - -
Rops8g01141 354 FunFam SKP1-like protein 21 isoform X1 12 162 - -
Rops8g01141 354 Coils Coil 223 249 - -
Rops8g01141 354 MobiDBLite consensus disorder prediction 268 285 - -
Rops8g01141 354 PANTHER SKP1 14 155 IPR016897 GO:0006511
Rops8g01141 354 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01141 Rops-Chr8 24077375 24085104 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01141 - - gmx:100809439 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01141 8 24077375 24085104 Rops8g01141 8 24077375 24085104 ECH
Rops4g01493 4 37723267 37731363 Rops8g01141 8 24077375 24085104 ECH
Rops8g01141 8 24077375 24085104 Rops4g01493 4 37723267 37731363 PCT