Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01493 ATGTCAGAAATTGACATGGAAGTTATTAAACCTGAGATGATGAAGCCTTATGTCTGGCTTCAAACTTCTGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGTCCACTGATATGTCAAGAAATAATGCAAAAAGGCTTGGGATCTTCCAAGAATTGTGCCATATGTCTTCCTCAACAAGTCAATCCTGCCATGTTGAGTTTAATTCTTGATTATTGTCGATTTCATCAAGTACCAGGCCGCTCAAACAAGGAGCGGAAGTCTTATGATGAAAAGTTCATTAGGATAGACACAGATAGGCTCTGTGAGTTGACGTCTGCTGCAGACAGCCTTCAGTTAAAACCGTTGGTTGATCTTACCAGTCGTGCACTGGCTCGAATAATTGAAGGAAAAACACCAGAGGAGATACGTGAGATATTTCATTTGCCTGATGATCTTACAGAGGAAGAGAAGTTGGAGCCCCTGAGAAACATAACCGACGACCCAAGGATCAGGCTTTTGAACCGTTTGTATGCCAAAAAGAGGAAAGAACTAAAGGAGCGTGAAATGTTAAAGAATGTTGAAGTCGAAGGAGAGCATGTAGATGAACGTTCAGTTGACGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATACGAAGGGGATTAAAACTTCCAAGAATAAAAAGAACCGGAGGAAAAAAGAGCAACAGAAGAACACTTATTTGAAAGAAGTGTCTGAACTGAATAAGAAGGAGGTAAACGGTCATAATATCAGACACCAAAATTCTGAAGCTGATAGAATTGGTGAGACCTCAAATTTACATGATACAGAAGATGACACTTTTACTCCTAAGGTTGAGTTTGATGATGGCGATGTAGATGATGAGATCGATCCTGCATTACAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCATATTAAATTCTGACTGGCCAGAGAGAATGCAAGAACTTTTATCCTCAGGGCAAGAAAGAAAGACAATGCTTTTTACTCCCCATGGGAATGGTTTTCTAAGGCGACATACTTGACTGGACTCAGAATGGAAACCTTACCAGATCAGATGGCCAATGGCTTGA 1095 0.4 MSEIDMEVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIMQKGLGSSKNCAICLPQQVNPAMLSLILDYCRFHQVPGRSNKERKSYDEKFIRIDTDRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAKKRKELKEREMLKNVEVEGEHVDERSVDDLLSFINGNDGDTKGIKTSKNKKNRRKKEQQKNTYLKEVSELNKKEVNGHNIRHQNSEADRIGETSNLHDTEDDTFTPKVEFDDGDVDDEIDPALQEKIDREVEDFARILNSDWPERMQELLSSGQERKTMLFTPHGNGFLRRHT*LDSEWKPYQIRWPMA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01493 363 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Rops4g01493 363 SMART skp1_3 15 116 IPR001232 GO:0006511
Rops4g01493 363 MobiDBLite consensus disorder prediction 213 235 - -
Rops4g01493 363 Coils Coil 228 248 - -
Rops4g01493 363 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Rops4g01493 363 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Rops4g01493 363 MobiDBLite consensus disorder prediction 265 291 - -
Rops4g01493 363 SUPERFAMILY POZ domain 16 80 IPR011333 -
Rops4g01493 363 MobiDBLite consensus disorder prediction 265 285 - -
Rops4g01493 363 FunFam SKP1-like protein 21 isoform X1 12 162 - -
Rops4g01493 363 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Rops4g01493 363 PANTHER SKP1 14 155 IPR016897 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01493 Rops-Chr4 37723267 37731363 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01493 - - gmx:100794666 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01493 4 37723267 37731363 Rops4g01493 4 37723267 37731363 ECH
Rops4g01493 4 37723267 37731363 Rops8g01141 8 24077375 24085104 ECH
Rops8g01141 8 24077375 24085104 Rops4g01493 4 37723267 37731363 PCT