Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01047 ATGGAATTCCTCAACTGGAAACCCAGTTGCAGGTCCGATAGTAGCTCTTTGTCCTGTGGGAGGGTAACTTCAAACAGAACCAAAGGTGATGAACTTGTAATTATTCACCTTGGTGATTGCTTGTGGAAGGAGAGAAGTGAGATTACTGCTGCACACATCTGCTATTTAGTTGCTGAAGCAAACTTTGAGTCATACTCAGACAGTGCAAGACTCTGTTTGGTAGGAGCAGATCACTGGAAATGTCCTCGAACTTGTGGGAGGGGGCATGCTGCCTTACCTCACCTATCTGATGACACTGCTCCTCTCCCATCACAAGACATCCCTAAACAACCCTTTGAAAAAACCAATATTTCCCACATAGTTTTTGGCATAGGAGCCTCAGCAAAATTATGGAATCATAGGAAAGAATACATCAAACTATGGTGGAGGCCTAATGAAACAAGGGGCAATGTGTGGCTAGACCAAAAAGTGCAAACTGAACCTGGTGATGAGTATCTTCTTCCCACATTGAAGATTTCTAGTGACACTTCAAAGTTCAAGTACAAAAACCCACATGGCAAAAGATCTGGGATTCGTATATCTCGAATAGTGTCTGAAACAGTGAGGCTTGGGATGGAGAATGTGAGGTGGTTTGTGATGGGAGATGATGACACTTTCTTTGTGACTGAGAATTTGGTGAAGGTGTTGCAAAAATATGATCATAATCTATTTTATTATATTGGGACCTCTTCAGAGAGTCACTTTCAGAATATACATTTTTCTTATAATATGGCTTATGGGGGTGGTGGTTTTGCCATTAGTTACCCTTTGGCTGTGGCATTGGAGAGAATGCAAGATAGGTGCATTCAGAGGTACCCAACATTGTATGGCTCTGATGATAGGATTCAAGCTTGTATGGCAGAGCTTGGTGTTCCACTCACCAAGGAGATAGGCTTTCATCAGTTTGATGTGTATGGCAATGTGTTTGGTCTTCTAGCGGCTCATCCAGTTACACCACTTATATCCATGCATCACTTGGACCTAATTGAGCCCATATTTCCTAACATGAACCGGGTACAGGCCCTGCAAAGACTCAACGACCCAATAAAACTGGACTCATATGGGCTCATGCAACAATCCATTTGCTATGACAAAAACCGGGTTTGGACCATATCCGTTTCTTGGGGCTATACGGTTCAAATATTCCGGGGCATTTTCTCGGCCAGAGATATTGAAATGCCCGCGAGAACCTTTCTGAATTGGTATCGTAAAGCTGATTATACCGGATATCCATTTAACACACGCCCTTTTACCCGAAATGCTTGTCAAAAACCATTTGTTTTTTACATGGCTAATGCAACCTATGATGCTATTACTAATGAAACTTTAACCAAGTATATTCGGATTCAACCTAACCCGAATTGCAAGTGGAGAATGGCGGATCCCACACAAATCCAAATAGTGGAGGTTTACAAGAAACCCGACCCATATTTGTGGGACAAGACTCCAAGAAGGAATTGTTGCAGGGTTCAAGAAACAAAAGAGGAAGGAACTCTAGTGATTGACGTTGGGGACTGCAGAGAAGATGAAGTTGTTGGATCGTAG 1584 0.4261 MEFLNWKPSCRSDSSSLSCGRVTSNRTKGDELVIIHLGDCLWKERSEITAAHICYLVAEANFESYSDSARLCLVGADHWKCPRTCGRGHAALPHLSDDTAPLPSQDIPKQPFEKTNISHIVFGIGASAKLWNHRKEYIKLWWRPNETRGNVWLDQKVQTEPGDEYLLPTLKISSDTSKFKYKNPHGKRSGIRISRIVSETVRLGMENVRWFVMGDDDTFFVTENLVKVLQKYDHNLFYYIGTSSESHFQNIHFSYNMAYGGGGFAISYPLAVALERMQDRCIQRYPTLYGSDDRIQACMAELGVPLTKEIGFHQFDVYGNVFGLLAAHPVTPLISMHHLDLIEPIFPNMNRVQALQRLNDPIKLDSYGLMQQSICYDKNRVWTISVSWGYTVQIFRGIFSARDIEMPARTFLNWYRKADYTGYPFNTRPFTRNACQKPFVFYMANATYDAITNETLTKYIRIQPNPNCKWRMADPTQIQIVEVYKKPDPYLWDKTPRRNCCRVQETKEEGTLVIDVGDCREDEVVGS* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01047 527 Pfam Protein of unknown function, DUF604 249 501 IPR006740 -
Rops8g01047 527 Gene3D - 108 367 - -
Rops8g01047 527 PANTHER FRINGE-RELATED 69 523 - -
Rops8g01047 527 Pfam Sec23-binding domain of Sec16 21 87 IPR024298 -
Rops8g01047 527 FunFam Fringe-related protein-like 108 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01047 Rops-Chr8 22411242 22416357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01047 114 521 Glycosyltransferase AT5G41460 68.537 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01047 - - gmx:100777888 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01047 8 22411242 22416357 Rops4g01525 4 38188248 38192459 PCT