Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00264 ATGGATTGTTGGTCCTCTCCTCTGCCTTTAGATGATGAATTCGAGAAGCTTGTCATTCGAATGAATCCTCCAAGGGTTACTGTGGATAACACTTCAAGCAGAACAGAAACTGTGATAAAGGTTGATAGCGCAAATAGGCGTGGGAGTTTGTTGGAAGTGGTTCAGGTTCTTACTGATATGAATTTCATTGTGAGAAGAGCTTACATTTCTTCTGATGGAGAATGGTTCATGGATGTTTTTCATGTTACGGATCAAAATGGGAAGCAGTGTCTTCAAGAAGATGCAGCTGACCGCATTCAACAGTCATTGGGTCCAAGAGTTCGTAGTTTCAGATCCTTAAGAAGGTCTGTTGGGGTCCAAGCTGCAGAAGAACATACAACAATTGAGTTAACTGGAAGAGACAGGCCAGGATTGCTTTCAGAAGTTTTTGCAGTTCTTGCAGACCTCAAATGCAATGTGGTAGCAGCAGAAGTTTGGACTCACAATTCAAGAATGGCATCAGTTGTTTACATCACTGATGAGGAAACAGGATTGCCACTGGACAATCCTGATCGCCTTTCTAAGATTAAGCGGCTTCTATTGTATGTGCTGAAAGGAGACAAAGATAAGAAGAGTGCCAACACTGCTGTTTCTGTTGGTTCTACTCACAAGGAAAGGAGACTGCATCAATTGATGTATGCTGATCGAGATTATGACACACATGATGGGGATTATGGGTCAACAAGTGACAGGAACAAGCTCCTTGTAACTGTTGATGATTGCATAGATAAGGGATACACAGTTGTGAATTTGAGATGTCCAGATCGACCAAAGTTACTATTTGATATCGTGTGCACACTCACAGACATGCAGTATGTTGTGTACCATGGAACTGTCATTGCTGAAGGACCAGAAGCATATCAGGAATATTACATAAGGCATATGGATGGATGTCCTATCAGTTCAGAAGCAGAAAGGGAAAGAGTGATTCATTGCTTGGAGGCTGCTATTAGGAGACGAACTTCTGAGGGCATAAAGCTAGAACTATGTGGTGAAGATAGGGTTGGCCTTCTATCAGATGTAACTCGAATCTTCAGAGAAAATGGCCTTTCAGTTAGCCGTGCTGAGGTTACAACAAGGGGTTCTCAAGCCGTGAATGTTTTCTATGTGACTGATGTATCTGGAAATCCAGTTAAGAGTGAAACAATTGAGGCAGTTAGAAAAGAGATTGGCTTGACCATACTGCGTGTAAAAGATGAAGTGTGCTCAAAATCTCCATCCCAGGAGAGTGGAAAATTCTCTTTCTGTGATCTCTTTCGATCCAGCTCTGAGAAGTTTCTTTACAACTTGGGTCTCATGAAGTCTTGTTCTCTTGAACCTTAG 1362 0.4207 MDCWSSPLPLDDEFEKLVIRMNPPRVTVDNTSSRTETVIKVDSANRRGSLLEVVQVLTDMNFIVRRAYISSDGEWFMDVFHVTDQNGKQCLQEDAADRIQQSLGPRVRSFRSLRRSVGVQAAEEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEETGLPLDNPDRLSKIKRLLLYVLKGDKDKKSANTAVSVGSTHKERRLHQLMYADRDYDTHDGDYGSTSDRNKLLVTVDDCIDKGYTVVNLRCPDRPKLLFDIVCTLTDMQYVVYHGTVIAEGPEAYQEYYIRHMDGCPISSEAERERVIHCLEAAIRRRTSEGIKLELCGEDRVGLLSDVTRIFRENGLSVSRAEVTTRGSQAVNVFYVTDVSGNPVKSETIEAVRKEIGLTILRVKDEVCSKSPSQESGKFSFCDLFRSSSEKFLYNLGLMKSCSLEP* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00264 453 SUPERFAMILY ACT-like 123 194 IPR045865 -
Rops8g00264 453 CDD ACT_ACR_4 337 408 - -
Rops8g00264 453 ProSiteProfiles ACT domain profile. 38 115 IPR002912 -
Rops8g00264 453 Pfam ACT domain 126 175 IPR002912 -
Rops8g00264 453 Pfam ACT domain 341 401 IPR002912 -
Rops8g00264 453 Pfam ACT domain 37 86 IPR002912 -
Rops8g00264 453 CDD ACT_ACR_2 126 199 - -
Rops8g00264 453 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 9 411 IPR040217 -
Rops8g00264 453 SUPERFAMILY ACT-like 335 404 IPR045865 -
Rops8g00264 453 ProSiteProfiles ACT domain profile. 339 417 IPR002912 -
Rops8g00264 453 CDD ACT_ACR_3 259 333 - -
Rops8g00264 453 SUPERFAMILY ACT-like 35 104 IPR045865 -
Rops8g00264 453 Gene3D - 337 411 - -
Rops8g00264 453 Gene3D - 121 193 - -
Rops8g00264 453 ProSiteProfiles ACT domain profile. 127 204 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00264 Rops-Chr8 5242550 5245149 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00264 - - gmx:100798999 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00264 8 5242550 5245149 Rops8g00264 8 5242550 5245149 ECH
Rops8g00264 8 5242550 5245149 Rops2g04220 2 76678208 76681265 ECH