Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01157 ATGCTAAGCAAGTTGCACATATCTCCAAGTTTGAGGCATGTAACTGTGCTACCAGGCAAAGGGTTTAAGGAGTTTATCAAAGTGAAGGTTGCATCAAGGCGTCTTTCTTATAGGATGCTTTTCTATGCACTCTTGTTCTTCACTTTTCTTCTACGGTTTGTGTTTGTTTTAACAGCAGTGGATGGCATTGATGGAGAAGACAAGTGCTCTACCATAGGTTGCCTAGGAAAAAAACTAGGGCCAAGGATTTTGGGAAGACGGCCTGAATCAACTGTCCCAGAAGTGATATACCAAACGTTAGATGAACCTCTTGGTGAAGATGAACTAAAGGGAAGGTCTGATATTCCACAGACTTTAGAAGAGTTCATGACTGAAATGAAGGAAGGTGGATATGATGCCAAGACATTTGCAGTTAAACTTAGAGAAATGGTAACCCTTATGGAACAAAGGACAAGAATGGCCAAAATCCAAGAATATCTATATCGTCATGTAGCATCAAGCAGCATACCTAAACAACTTCATTGCCTTGCTTTGAGGCTGGCCAATGAGCACACCAACAATGCAGCAGCACGCCTTCAGCTACCCTCTGCAGAACTAGTCCCTGCCCTTGTTGACAATTCCTACTTCCACTTTGTCCTAGCCTCAGACAATGTGCTGGCTGCATCTGTGGTTGCAACATCACTTGTTCGCAACAGTTTGCGACCTCAGAAAGTTGTTCTGCACATAATTACAGATAAGAAGACTTATTATCCCATGCAGACTTGGTTCTCATTGCATCCTTTATCACCTGCTATAATTGAGGTCAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGGAAGGTTCCTGTTCTGGAAGCAATGGAGAAAGATCAAAAGGTGCGGTCACAGTTTAGAGGGGGTTCATCAGCTATAGTTGCAAATACCACTGAGAAGCCATATGTTATTGCAGCAAAACTACAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATCAGGATACATCTCCCAGAGTTGTTTCCAAGTCTTAATAAGGTCGTCTTCCTCGATGATGACATTGTGGTACAAACTGATCTTACACCTCTGTGGGACATTAACATGGATGGAAAAGTCAATGGAGCAGTGGAAACATGTAGTGGAGAAGATAAGTTTGTGATGTCAAAGAGGTTGAAAAGCTATTTGAACTTTTCCCATCCTCTAATAGCAGAAAATTTTAATCCCAATGAATGTGCTTGGGCCTATGGCATGAACATTTTTGATTTGGAGGCTTGGAGGAAGACCAATATAAGCAATACATATCATTATTGGGTTGAGCAGAATATTAAATCAGACCTGAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTGATAGCATTTCATGGTCATGTTCACATTATTGATCCTTTCTGGCATATGCTGGGATTGGGATATCAGGAAAATACAAGTTTAACTGATGCTGAGAGTGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTTCCACAACTACGGCCATTGTGGACAAAGTATGTTGACTTCTCAGATAAGTTCATCAAGAGCTGTAACATTAGGGCATCATAG 1608 0.4167 MLSKLHISPSLRHVTVLPGKGFKEFIKVKVASRRLSYRMLFYALLFFTFLLRFVFVLTAVDGIDGEDKCSTIGCLGKKLGPRILGRRPESTVPEVIYQTLDEPLGEDELKGRSDIPQTLEEFMTEMKEGGYDAKTFAVKLREMVTLMEQRTRMAKIQEYLYRHVASSSIPKQLHCLALRLANEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVATSLVRNSLRPQKVVLHIITDKKTYYPMQTWFSLHPLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQKVRSQFRGGSSAIVANTTEKPYVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLTPLWDINMDGKVNGAVETCSGEDKFVMSKRLKSYLNFSHPLIAENFNPNECAWAYGMNIFDLEAWRKTNISNTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHIIDPFWHMLGLGYQENTSLTDAESAGVIHFNGRAKPWLDIAFPQLRPLWTKYVDFSDKFIKSCNIRAS* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01157 535 Pfam Glycosyl transferase family 8 177 508 IPR002495 GO:0016757
Rops7g01157 535 CDD GT8_like_1 209 521 - -
Rops7g01157 535 SUPERFAMILY Nucleotide-diphospho-sugar transferases 210 532 IPR029044 -
Rops7g01157 535 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 112 532 IPR029993 GO:0047262
Rops7g01157 535 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 211 529 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01157 Rops-Chr7 15500506 15504102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01157 4 535 Glycosyltransferase AT5G54690 79.963 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01157 K20867 - gmx:100802623 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01157 7 15500506 15504102 Rops7g01157 7 15500506 15504102 ECH
Rops7g01157 7 15500506 15504102 Rops3g01655 3 25912189 25915574 PCT