Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01655 ATGCAGCTGCAGATATCACCAAGTTGCCTGGGAAAAAAACTGAGGCCTAAGATTTTGGGAAGAAGTCTTGAATCAACTGTTCCAGAAGTTATATACGGAATATTAGATCAACCCCTTGGCAAAGATGAACTAGAGGGAAGATCTGATATTCCTCAGACTTTAGAAGAGTTCATGACTGAAATAAAGGAAGGTGGATATGATGCCAAGACATTTGCAATTAAACTAAGAGAAATGGTAACCTTTATGGAACAAAGGACCAGGATGGCTAAAATCCAAGAATATTTATATCGTCATGTAGCATCAAGCAGCATACCAAAACAGCTTCATTGCCTTGACTTGAGGCTTGCCAGTGAGCACACAAACAATGCAGCAGCACGCCTTCAGCTACCCTCTGCAGAACTTGTCCCTGCATTGGTTGACAACTCCTACTTCCACTTTGTCCTTGCCTCAGATAATGTGTTGGCTGCTTCTGTGGTTGCAAAATCACTAGTTTACAACAGTTTGCGACCTCAGAAAATTGTTCTGCACATAATCACAGATAGAAAGACTTATTATCCAATGCAGGCTTGGTTTTCATTGCACCCTTTATCACCTGCTATAGTTGAGGTCAAGGCATTGCATCATTTTGATTGGTTTACAAAGGGAAGAGTACCTGTGCTGGAGGCAATGGAGAAAGATCAACATGTGAGATCACAGTTCAGAGGGGGTTCATCAGCTATAGTTGCAAATAAAACTGAGAAGCCAAATGTTATTGCAGCAAAGCTGCAAGCACTCAGTCCAAAGTATAATTCAGTGATGAATCACATAAGGATACATCTTCCAGAGTTGTTTCCAAGTCTTAACAAGGTGGTCTTCCTTGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACATGAATGGAAAAGTCAATGGAGCAGTAGCAACATGCAGTGGAGAAGATAAGTTTGTGATGTCAAAGAGGTTGAGAAGCTATTTGAACTTCTCCCACCCTCTTATATCCAAAAATTTTGATCCCAATGAATGTGCTTGGGCTTATGGAATGAACATTTTTGACCTGGAGGCTTGGAGGAAGACCAATATAAGCTTTACATACCATTACTGGGTTGAGCAGAACATAAAATCAGACCTCAGTTTATGGCAGCTAGGGACATTACCTCCTGGATTAATAGCATTCCATGGTCATGTTCACACTATTGATCCTTTCTGGCACATGCTGGGATTGGGATATCAGGAAGATACAAGTTTTACTGATGCTCAGAGTGCTGGGGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTGGATATAGCTTTTCCACAACTAAGGCCACTGTGGACTAAGTATATTGACTTTTCAGATCACTTCATCAAGAGCTGTCACATTAGAGCAACATAG 1413 0.414 MQLQISPSCLGKKLRPKILGRSLESTVPEVIYGILDQPLGKDELEGRSDIPQTLEEFMTEIKEGGYDAKTFAIKLREMVTFMEQRTRMAKIQEYLYRHVASSSIPKQLHCLDLRLASEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVAKSLVYNSLRPQKIVLHIITDRKTYYPMQAWFSLHPLSPAIVEVKALHHFDWFTKGRVPVLEAMEKDQHVRSQFRGGSSAIVANKTEKPNVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVATCSGEDKFVMSKRLRSYLNFSHPLISKNFDPNECAWAYGMNIFDLEAWRKTNISFTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHTIDPFWHMLGLGYQEDTSFTDAQSAGVIHFNGRAKPWLDIAFPQLRPLWTKYIDFSDHFIKSCHIRAT* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01655 470 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 146 463 IPR029044 -
Rops3g01655 470 Pfam Glycosyl transferase family 8 147 443 IPR002495 GO:0016757
Rops3g01655 470 SUPERFAMILY Nucleotide-diphospho-sugar transferases 145 467 IPR029044 -
Rops3g01655 470 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 46 467 IPR029993 GO:0047262
Rops3g01655 470 CDD GT8_like_1 144 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01655 Rops-Chr3 25912189 25915574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01655 6 470 Glycosyltransferase AT5G54690 80.258 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01655 K20867 - gmx:100777811 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01655 3 25912189 25915574 Rops3g01655 3 25912189 25915574 ECH
Rops7g01157 7 15500506 15504102 Rops3g01655 3 25912189 25915574 PCT