Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00898 ATGACTAAGATGTCTGGGTTCTTGGGATTTTTTGTGTGTTTTTTGTTGGTGGGGTTGGCTGCTTCTGCTAAGTTTGATGAACTCTTCCAACCCAGTTGGGCTATGGATCATTTTATCCATGAAGGAGAACTCCTCAAACTCAAACTTGATAATTATTCCGGTGCTGGTTTTGGATCCAAGAGCAAGTATATGTTTGGGAAAGTGAGCATCCAGCTTAAGCTTGTGGAAGGTGACTCTGCTGGAACCGTTACTGCTTTCTATATGTCATCTGACGGCCCAAATCACAACGAATTTGATTTTGAGTTTTTGGGCAACACCACTGGGGAACCTTACTCGGTCCAAACCAACGTGTATGTGAATGGGGTTGGTAACAGGGAGCAAAGACTCAACCTTTGGTTCGACCCCACCAAGGAATTCCACTCCTACTCCGTCTTCTGGAACCAGCGCCAAGTTGTATTCCTAGTGGATGAGACGCCAATAAGGGTGCACACAAATCTCGAACACAAAGGAATTCCTTTTCCAAAAGACCAAGCCATGGGGGTATACAGTTCTATATGGAATGCTGATGATTGGGCCACTCAAGGTGGTCGAGTGAAGACAGATTGGAGCCATGCACCTTTCTTTGCTACTTACAAGGACTTTGATATCAATGCTTGTGAGTGCTCCGTGCCAGTGACATCAGCAGATAATGCTAAGAAGTGTAGTAGCAGTGAGGATAAGAAGTATTGGTGGGATGAACCTACATTGTCCGAGCTCAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAGGGCTAACCATATGGTCTATGACTATTGTAGTGACACTGCTAGGTTCCCTGTCACACCTGCTGAGTGTGTGCATCATCGTCACTAG 876 0.4578 MTKMSGFLGFFVCFLLVGLAASAKFDELFQPSWAMDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVSIQLKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKEFHSYSVFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFFATYKDFDINACECSVPVTSADNAKKCSSSEDKKYWWDEPTLSELNLHQSHQLMWVRANHMVYDYCSDTARFPVTPAECVHHRH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00898 291 Gene3D - 16 291 - -
Rops7g00898 291 PRINTS Glycosyl hydrolase family 16 signature 113 126 IPR008264 GO:0004553|GO:0005975
Rops7g00898 291 PRINTS Glycosyl hydrolase family 16 signature 55 73 IPR008264 GO:0004553|GO:0005975
Rops7g00898 291 PRINTS Glycosyl hydrolase family 16 signature 131 148 IPR008264 GO:0004553|GO:0005975
Rops7g00898 291 Pfam Glycosyl hydrolases family 16 28 203 IPR000757 GO:0004553|GO:0005975
Rops7g00898 291 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 211 IPR000757 GO:0004553|GO:0005975
Rops7g00898 291 PIRSF EndGlu_transf 1 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops7g00898 291 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 239 286 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Rops7g00898 291 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 22 286 IPR044791 GO:0004553
Rops7g00898 291 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 290 IPR013320 -
Rops7g00898 291 CDD GH16_XET 20 286 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops7g00898 291 FunFam Xyloglucan endotransglucosylase/hydrolase 12 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00898 Rops-Chr7 11953185 11955624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00898 55 291 Glycoside Hydrolase AT4G03210 78.903 1.37e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00898 K08235 - gmx:100801567 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01274 3 18345673 18348258 Rops7g00898 7 11953185 11955624 PCT