Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01274 ATGTCTAAAATGTCTGGGTTCTTGGGATTGTTTGTGGGTCTTGTGTTGGTGGTGGGGGTGGCTGAAGCTGCCACTACCAAGTTTGATGAACTCTTCCAGTCAAGCTGGGCTTTGGACCATTTAATTTATGAAGGAGACCTTCTCAAACTCAAACTTGATAATTATTCTGGTGCTGGTTTTGGATCCAAAAGCAAGTACATGTTTGGGAAAGTAACCATCCAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTTACAGCTTTCTATATGTCATCTGACGGTCCAAATCATAACGAGTTTGATTTTGAGTTTTTGGGTAACACCACAGGGGAACCTTACTCGGTGCAAACCAATGTTTATGTGAATGGAGTTGGTAACAGGGAGCAAAGACTCGACCTTTGGTTCGACCCCTCCAAGGATTTTCACTCTTATTCTATTTTCTGGAATCAACGTCAAGTTGTATTTCTAGTGGATGAAACTCCAATAAGGGTGCACACAAATATGGAACACAAAGGGATTCCTTTTCCTAAAGACCAACCAATGGGTGTATACAGTTCTATATGGAATGCTGATGATTGGGCCACTCAGGGTGGTCGTGTGAAAACGGATTGGAGCCATGCACCCTTCATTGCTACCTACAAGGCCTTTGAAATCAATGCCTGTGAGTGTCCTGTGTCTGTGGCTGCAATGGACAATGCCAAGAGGTGTAGCAGCAGTGAGGATAAGAAGTATTGGTGGGATGAGCCTAATTTGTCTGAACTCAGCTTGCATCAGAGCCATCAGCTTATGTGGGTTAGGGCCAAACATATGGTCTATGACTATTGCTCTGACACTGCTAGGTTCCCAGTTATTCCTGCTGAGTGTGTCCATCATCGTCACCAGTGA 888 0.4471 MSKMSGFLGLFVGLVLVVGVAEAATTKFDELFQSSWALDHLIYEGDLLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLDLWFDPSKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPFPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFIATYKAFEINACECPVSVAAMDNAKRCSSSEDKKYWWDEPNLSELSLHQSHQLMWVRAKHMVYDYCSDTARFPVIPAECVHHRHQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01274 295 PRINTS Glycosyl hydrolase family 16 signature 116 129 IPR008264 GO:0004553|GO:0005975
Rops3g01274 295 PRINTS Glycosyl hydrolase family 16 signature 58 76 IPR008264 GO:0004553|GO:0005975
Rops3g01274 295 PRINTS Glycosyl hydrolase family 16 signature 134 151 IPR008264 GO:0004553|GO:0005975
Rops3g01274 295 Pfam Glycosyl hydrolases family 16 31 206 IPR000757 GO:0004553|GO:0005975
Rops3g01274 295 CDD GH16_XET 23 289 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops3g01274 295 PIRSF EndGlu_transf 1 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops3g01274 295 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 289 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Rops3g01274 295 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 293 IPR013320 -
Rops3g01274 295 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 25 289 IPR044791 GO:0004553
Rops3g01274 295 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 5 214 IPR000757 GO:0004553|GO:0005975
Rops3g01274 295 FunFam Xyloglucan endotransglucosylase/hydrolase 15 291 - -
Rops3g01274 295 Gene3D - 14 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01274 Rops-Chr3 18345673 18348258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01274 58 294 Glycoside Hydrolase AT4G03210 75.105 3.63e-141 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01274 K08235 - gmx:100785982 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01274 3 18345673 18348258 Rops7g00898 7 11953185 11955624 PCT