Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00767 ATGGGTCAGGGTCTTAGTTGCAGTGGCAACCATGACCATGGTCTCTTCATTGCTGTGCAGCAAGGTGACCTTCAAATTGTTACAACTCTGTTAGAGACAGACCCAACTCTCTTGCATCAAACTACTCTCTATGATCGTCACTCTGCTCTTCATATTGCTGCAGCTAATGGCCAGATCGAGATTCTGTCAAGGCTTTTAGATGGATCTATTAACCCAGATATATTAAATCGCCAAAAGCAGACTCCGCTTATGTTGGCAGCAATGCACGGAAAGATTGACTGTGTGGAGAAGCTCCTTGAAGCGGGTGCTAATGTATTGATGTTTGATACACTTAATGGAAGAACCTGTTTACACTATGCTGCCTACTATGGCCATTCTTCTTGCCTTAAGGCTATTCTTTCTGCTGCTCAATCTAGTCCAGTGGCTGCTTCATGGGGATTTGCTCGGTTTGTGAATATTAGAGATGCAAAGGGTGCAACGCCATTGCACTTGGCAGCCCGTCAAAGAAGGCCTGAATGTGTGCATATTCTATTAGATAGTGGAGCTCTTGTTTGTGCTTCCACTGGTAGATATGGCTGTCCTGGGAGCACTCCCCTTCATCTAGCTGCTAGAGGGGGATCTCTGGATTGCATTCGTGGATTGTTGGCATGGGGTGCGGATCGTCTCCATCGTGATGCATCTGGGCGGATACCATTTGTGGTTGCTCTGAAACACAGACATGGGGCATGTGCGTCACTGCTAAATCCTACATCTGCAGAGCCTCTTGTCTGGCCATCTCCATTGAAGTTCATCAGTGAACTTAATCCAGAGGCCAAAGCTTTATTAGAACAGGCCTTGATGGATGCAAACAGAGAAAGGGAGAAAAACATATTAAAGGGGAGTGCTTATTCTCTTCCATCTCCATCACATTCTGATGGGGTAGATGACAATATTTCTGAGGTTAGTGAGTCGGAGTTATGCTGCATCTGCTTTGAGCAAGTATGCACAATTGAAGTTCAAAACTGTGGCCACCAAATGTGTGCACAATGCACACTAGCCCTTTGTTGCCACAACAAGCCTAACCCTGCCACTGCTTGTATTACCCCACCAGTTTGTCCATTTTGCCGAAGCACCATAGCTAGACTAATGGTTGTGAAGATAAAAACTCATGATGAAGCTGATCAAGATAATGTTGATCTCAATAGTTCCAAGCTAAGCAAGTCAAGGAAACTCAGAAACTTGACTGACAGTGGTAGCAGCAGCTTCAAGGGATTATCATTTGGAAAGTTGGGTGGCCGAAGCTCTGGAAGGATTGCTGCTGAGTGGGTTGATAAACAGTGA 1320 0.4545 MGQGLSCSGNHDHGLFIAVQQGDLQIVTTLLETDPTLLHQTTLYDRHSALHIAAANGQIEILSRLLDGSINPDILNRQKQTPLMLAAMHGKIDCVEKLLEAGANVLMFDTLNGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDAKGATPLHLAARQRRPECVHILLDSGALVCASTGRYGCPGSTPLHLAARGGSLDCIRGLLAWGADRLHRDASGRIPFVVALKHRHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSAYSLPSPSHSDGVDDNISEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACITPPVCPFCRSTIARLMVVKIKTHDEADQDNVDLNSSKLSKSRKLRNLTDSGSSSFKGLSFGKLGGRSSGRIAAEWVDKQ* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00767 439 Gene3D - 7 145 IPR036770 -
Rops7g00767 439 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Rops7g00767 439 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Rops7g00767 439 Gene3D - 146 197 IPR036770 -
Rops7g00767 439 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Rops7g00767 439 MobiDBLite consensus disorder prediction 404 426 - -
Rops7g00767 439 SUPERFAMILY RING/U-box 315 374 - -
Rops7g00767 439 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Rops7g00767 439 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 15 135 - -
Rops7g00767 439 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Rops7g00767 439 SUPERFAMILY Ankyrin repeat 11 250 IPR036770 -
Rops7g00767 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 390 IPR013083 -
Rops7g00767 439 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Rops7g00767 439 SMART ANK_2a 45 74 IPR002110 GO:0005515
Rops7g00767 439 SMART ANK_2a 227 256 IPR002110 GO:0005515
Rops7g00767 439 SMART ANK_2a 78 107 IPR002110 GO:0005515
Rops7g00767 439 SMART ANK_2a 112 142 IPR002110 GO:0005515
Rops7g00767 439 SMART ANK_2a 157 186 IPR002110 GO:0005515
Rops7g00767 439 SMART ANK_2a 10 39 IPR002110 GO:0005515
Rops7g00767 439 SMART ANK_2a 194 223 IPR002110 GO:0005515
Rops7g00767 439 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Rops7g00767 439 Pfam Ankyrin repeat 195 224 IPR002110 GO:0005515
Rops7g00767 439 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Rops7g00767 439 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Rops7g00767 439 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Rops7g00767 439 Gene3D - 198 251 IPR036770 -
Rops7g00767 439 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00767 Rops-Chr7 10380243 10383608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00767 77 247 Miscellaneous Gene Families AT5G02620 27.861 3.50e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00767 - - gmx:100786708 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00767 7 10380243 10383608 Rops7g00767 7 10380243 10383608 ECH
Rops7g00767 7 10380243 10383608 Rops3g00809 3 9880526 9883716 PCT