Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00809 ATGGGTCAGGGGCTGAGTTGCAGAGGCAGCCATGAACATGGACTCTTTCGTGCTGTGCAACATGGGGACCTTGAAACTGTTGCTACTTTGTTACAAACACACCCCTCTCTCATGCATCGAACCACTGTCTATGACCACCACTCTCCTCTTCATATTGCAGCTGCTAATGGCCAGATCCATGTTTTAACCAGGCTTTTAGATGGATCTGCGAGTCCAGATGTGTTGAATCGCCAAAAGCAGACACCACTTATGTTGGCAGCAATGCACGGAAAGATCGAATGTGTGGAAAAGCTACTAGAAGTGGGTGCTAATGTGTTAATGTTTGATGCTTGTTATGGAAGAACCTGCTTGCACTATGCTGCTTACTATGGTCATTCTTCTTGCCTTAAGGCAATTCTTTCTGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGTAGGGGAGCTACACCATTGCACTTGGCAGCCCGTCAAAGAAGGCCTGAATGTGTGCATATTCTATTGTGCAATGGAGCTCTTGTTAGTGCTTCAACTGGCAGATATGGCTGTCCTGGTAGTACTCCTCTTCATCTAGCAGCCAAAGGGGGATCTCTTGATTGCATCAGGGAATTGTTGGCATGGGGTGCAGATCGTCTTCAACGTGATGCATCTGGGCGGATACCATATTTAGTTGCTCTGAAGCACAAACATGGTGAATGTGCAGCATTGCTAAATCTTGCATCTGCACAGCCTCTTGTCTGGCCATCATCTTTGAAGATCATCAGTGAGCTTAATCCAGAGGCCAAAGCTTTATTGGAGCGGGCCTTGATGGATGCAAACAGGGAAAGGGAGAAAAACATATTGAAAGGGAGTGCTTACTCTCTTCCATCTCCATCACACTCTGATGGGGTGGAAGATGACAATATCTCTGAGGTTAGTGAGACAGAATTATGCTGCATCTGCTTTGAGCAAGTGTGTACAATTGAAGTCCAGGACTGTGGCCACCAAATGTGTGCACGATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAATCCTTCTACTTCTCGTCCTACCCCACCAGTTTGTCCATTCTGCAGAAGCACAATAGCTAGATTGGTGGTTATCAAGATAGAAAGTCATGATGACATTGATCAAGATGGTGTTGATATCAGTTGTTCCAAACCAAGCAAGTCAAGGAAATTCCTAAACTTGAATGAGGGTGGTAGCAGCAGTTTCAAGGGACTATCAAGTGTAAATTCATTTGGAAAGATATTTGCTTCTGAAAATGAGTGGGTTGATAATAAGCCACAGTGA 1326 0.4532 MGQGLSCRGSHEHGLFRAVQHGDLETVATLLQTHPSLMHRTTVYDHHSPLHIAAANGQIHVLTRLLDGSASPDVLNRQKQTPLMLAAMHGKIECVEKLLEVGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLCNGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYLVALKHKHGECAALLNLASAQPLVWPSSLKIISELNPEAKALLERALMDANREREKNILKGSAYSLPSPSHSDGVEDDNISEVSETELCCICFEQVCTIEVQDCGHQMCARCTLALCCHNKPNPSTSRPTPPVCPFCRSTIARLVVIKIESHDDIDQDGVDISCSKPSKSRKFLNLNEGGSSSFKGLSSVNSFGKIFASENEWVDNKPQ* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00809 441 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Rops3g00809 441 Pfam Ankyrin repeats (many copies) 195 235 IPR002110 GO:0005515
Rops3g00809 441 SUPERFAMILY RING/U-box 320 375 - -
Rops3g00809 441 Gene3D - 146 250 IPR036770 -
Rops3g00809 441 ProSiteProfiles Zinc finger RING-type profile. 321 370 IPR001841 -
Rops3g00809 441 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Rops3g00809 441 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Rops3g00809 441 CDD RING-HC_XBAT31-like 313 377 - -
Rops3g00809 441 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 15 138 - -
Rops3g00809 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 388 IPR013083 -
Rops3g00809 441 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Rops3g00809 441 Gene3D - 9 145 IPR036770 -
Rops3g00809 441 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Rops3g00809 441 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Rops3g00809 441 SMART ANK_2a 112 142 IPR002110 GO:0005515
Rops3g00809 441 SMART ANK_2a 10 39 IPR002110 GO:0005515
Rops3g00809 441 SMART ANK_2a 157 186 IPR002110 GO:0005515
Rops3g00809 441 SMART ANK_2a 78 107 IPR002110 GO:0005515
Rops3g00809 441 SMART ANK_2a 194 223 IPR002110 GO:0005515
Rops3g00809 441 SMART ANK_2a 227 256 IPR002110 GO:0005515
Rops3g00809 441 SMART ANK_2a 45 74 IPR002110 GO:0005515
Rops3g00809 441 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Rops3g00809 441 Pfam Ankyrin repeats (3 copies) 15 108 IPR002110 GO:0005515
Rops3g00809 441 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Rops3g00809 441 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Rops3g00809 441 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00809 Rops-Chr3 9880526 9883716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00809 12 331 Miscellaneous Gene Families AT5G60070 27.219 4.35e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00809 - - gmx:100800611 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00767 7 10380243 10383608 Rops3g00809 3 9880526 9883716 PCT