Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00635 ATGCCATCATCACTTTGCTCTTTCCTCCATGTGGTTCCTCTCTTCTCTCTTCTTTTATTCTCACTCATGATTTGTTGTAGTAATGCTCAGGGTCCACCTTCACCTGGGTACTACCCTAGTTCCAAAATTAGCCCTGTTAGCTTTGATCAAGGATTTAGAAACCTCTGGGGACCTCAGCATCAGAGACTAGACCAGGGCTCATTGACAATCTGGCTTGACTCTACCTCAGGGTGTGGATTCAAGTCACTTCACTCTTATCGATCTGGATACTTTGGTGCTGCGGTTAAGCTTCAACCCGGTTATACTGCTGGAGTCATTACATCTATTTACCTTTCAAATAACCAAGACTACCCACGAAACCATGATGAAATAGACATTGAGTTCCTTGGTACCACGCCAGATAAGCCATATGTTTTGCAGACAAATGTTTACATCAGAGGAAGTGGAGATGGGAAGAATATAGGAAGAGAGATGAAGTTTCATCTTTGGTTCGACCCAACACAAGATTTTCACAACTATGCCATTCTATGGAAACCCAGTGAGATCATCTTTTTAGTGGATGATGTCCCAATAAGGAGGTATCCTAGGAAGAGTGATGCTACATTCCCTGCAAGACCAATGTATGTGTACGGATCAATATGGGATGCATCTCCATGGGCTACAGAGAATGGAAAATACAAAGCTGATTATAAATTTCAACCCTTCATTGGTAGATACAAAAACTTCAAACTGCAAGGTTGTACCACTGAAGCCTCAGACTCATGCCAGCCACCATCAGCCTCACCATCTGGCTATAGCAGCTTGAGCCCTCAGCAGTTTTCTGCAATGCAATGGGTCCAAAACAGTTACTTGGTCTATGACTATTGCCATGATTCTAAGAGAGACCATGCACTAACTCCAGAATGCTAA 909 0.4301 MPSSLCSFLHVVPLFSLLLFSLMICCSNAQGPPSPGYYPSSKISPVSFDQGFRNLWGPQHQRLDQGSLTIWLDSTSGCGFKSLHSYRSGYFGAAVKLQPGYTAGVITSIYLSNNQDYPRNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGKNIGREMKFHLWFDPTQDFHNYAILWKPSEIIFLVDDVPIRRYPRKSDATFPARPMYVYGSIWDASPWATENGKYKADYKFQPFIGRYKNFKLQGCTTEASDSCQPPSASPSGYSSLSPQQFSAMQWVQNSYLVYDYCHDSKRDHALTPEC* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00635 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 266 302 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Rops7g00635 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 47 302 IPR044791 GO:0004553
Rops7g00635 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 39 239 IPR000757 GO:0004553|GO:0005975
Rops7g00635 302 PIRSF EndGlu_transf 7 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops7g00635 302 Gene3D - 28 302 - -
Rops7g00635 302 Pfam Glycosyl hydrolases family 16 49 231 IPR000757 GO:0004553|GO:0005975
Rops7g00635 302 FunFam Xyloglucan endotransglucosylase/hydrolase 35 302 - -
Rops7g00635 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 302 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00635 Rops-Chr7 8323281 8325446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00635 15 302 Glycoside Hydrolase AT3G44990 64.605 2.09e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00635 K08235 - gmx:100781528 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00635 7 8323281 8325446 Rops7g00635 7 8323281 8325446 ECH
Rops7g00635 7 8323281 8325446 Rops3g01003 3 12959704 12961699 PCT