Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01003 ATGCCATCATCACTATCCTCTTTCCTCCATATGGTTCCTCTCTCCTTTCTTCTTGTACTCTCACTGATGATTTGTGCTACTGCTCAGGGTCCACCTTCACCTGGCTACTACCCCAGTTCCAAAATTAGTCCTGTTAGCTTTAATCAAGGCTTTAGAAACCTTTGGGGATCTCGGCATCAAAGACTAGACCAAGGCTCACTAACAATTTGGCTTGACTCTAATTCAGGAAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGATACTTTGGTGCTGCAATTAAGCTTCAACCTGGCTATACTGCAGGAGTCATTACATCTTTCTATCTTTCAAACAACCAAGACCACCCAGGAAACCATGATGAAATTGACATTGAGTTCCTTGGTACTACGCCAGGTAAGCCATATGTGTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGGAATATTATCGGAAGAGAGATGAAGTTTCATCTTTGGTTCGACCCAACTCAAGATTTTCACAACTATGCCATTCTATGGAAACCCAGTGAGATAATATTTTTAGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAGAGTGATGCTACATACCCCTCAAGACCAATGTATGTGTATGGATCTGTATGGGATGCATCTTCATGGGCAACAGAGGATGGAAAATATAAAGCTGATTATAAATACCAACCCTTCATTGGTAGGTACAAAAACTTCAAACTGCAAGGTTGCACCACTGAAAGCTCTTCCTCATGCAAGCCACCTTCTGCCTCTCCATCTGGCTATAGCAGTTTAAGCTCTCAGCAGTTTTCAACCATGCAATGGGTCCAAAACAACTACATGGTCTACAATTATTGTCATGACCCTAGAAGAGACCATACACTCACCCCAGAGTGCTAG 906 0.426 MPSSLSSFLHMVPLSFLLVLSLMICATAQGPPSPGYYPSSKISPVSFNQGFRNLWGSRHQRLDQGSLTIWLDSNSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSFYLSNNQDHPGNHDEIDIEFLGTTPGKPYVLQTNVYIRGSGDGNIIGREMKFHLWFDPTQDFHNYAILWKPSEIIFLVDDVPIRRYPRKSDATYPSRPMYVYGSVWDASSWATEDGKYKADYKYQPFIGRYKNFKLQGCTTESSSSCKPPSASPSGYSSLSSQQFSTMQWVQNNYMVYNYCHDPRRDHTLTPEC* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01003 301 PIRSF EndGlu_transf 6 301 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops3g01003 301 Pfam Glycosyl hydrolases family 16 48 230 IPR000757 GO:0004553|GO:0005975
Rops3g01003 301 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 41 301 IPR044791 GO:0004553
Rops3g01003 301 SUPERFAMILY Concanavalin A-like lectins/glucanases 46 301 IPR013320 -
Rops3g01003 301 FunFam Xyloglucan endotransglucosylase/hydrolase 34 301 - -
Rops3g01003 301 Gene3D - 26 301 - -
Rops3g01003 301 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 26 238 IPR000757 GO:0004553|GO:0005975
Rops3g01003 301 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 265 301 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01003 Rops-Chr3 12959704 12961699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01003 12 301 Glycoside Hydrolase AT3G44990 66.212 6.83e-147 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01003 K08235 - gmx:100781528 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00635 7 8323281 8325446 Rops3g01003 3 12959704 12961699 PCT