Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00607 ATGGCGGCTGCTTTTTTTGTCTCCGTTGTGTTGTTAGCGGCGGTTGTTGTTGGATCTCCGGCGACCTTGACGTTGGAAAGGGCGTTTCCTACGAATCATGGAGTGGAGTTGAGTCAGCTGAGAGCTAGGGACATGTTCAGGCATCGTAGAATGTTGCAGTCTTCAAACGGTGTCGTTGATTTCCCTGTTCAAGGCACCTTTGATCCCTTCCAAGTTGGGCTCTACTTTACAAAGGTGCAGTTAGGTACTCCACCAGTAGATTTTTATGTGCAAATTGACACTGGCAGTGATGTTCTCTGGGTCAGTTGCACCTCCTGTAATGGTTGTCCACAGACAAGTGGCCTTCAGATTCAGCTCAATTTTTTTGATCCTGGGCATTCATCAACAGCTTCATCAATCTCTTGTTCTGACCAAAGATGCAATAGTGGAATACAATCATCAGATGCCAGCTGTTCCAGTCAGAACAACCAGTGCTCTTACAATTTCCAGTATGGAGATGGTAGTGGGACATCGGGCTATTATGTGTCAGATATGATGCGTTTTGACACTATTTTCGAGGGATCCGTGGCTACAAATTCTTCAGCTCCTGTAGTTTTTGGTTGTAGTAACCAGCAGACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGAATATTTGGATTTGGGCAACAGGAAATGTCTGTCATCTCCCAGCTCTCGTCACAAGGGGTTGCTCCTAGAGTATTCTCCCATTGTCTTAAAGGAGATAGTAGTGGCGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTTTATACTCCACTTGTTCCATCACAGCCTCATTACAATCTAAATCTGCAGAGCATCTCTGTCAACGGACAGGCATTGCAAATCGATTCATCAGTTTTTTCAACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCGTATCTTGCAGAAGAGGCTTATGATCCCTTTGTCAATGCGATTACAGCTGCAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACTTCCAGTGTCACTGACCTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGACTATCTTATACAGCAGAATTCTATTGGTGGCGCAGCAGTGTGGTGTATTGGCTTTCAGAAAATGCAGGGTCAAGGGGTGACAATTCTAGGAGATCTCGTATTAAAAGATAAAATTGTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTAACTATGACTGTTCTTTGTCGGTTAATGTCTCAGCAACAACTGGCACAGGCAGAAGTGAATATGTGAATCCTGGAGAGATAGGTGGAAGCACTTCTTTACGTGATGGACTTAAGTTGACAAAAACAGGGTTCTTAGCTTTCTTCGTGCACTTATCACTGATTTGCTGCTTTGTGTTTTTATAG 1473 0.4399 MAAAFFVSVVLLAAVVVGSPATLTLERAFPTNHGVELSQLRARDMFRHRRMLQSSNGVVDFPVQGTFDPFQVGLYFTKVQLGTPPVDFYVQIDTGSDVLWVSCTSCNGCPQTSGLQIQLNFFDPGHSSTASSISCSDQRCNSGIQSSDASCSSQNNQCSYNFQYGDGSGTSGYYVSDMMRFDTIFEGSVATNSSAPVVFGCSNQQTGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGVAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQALQIDSSVFSTSNNRGTIVDSGTTLAYLAEEAYDPFVNAITAAIPQSVRTVVSRGNQCYLITSSVTDLFPQVSLNFAGGASLVLRPQDYLIQQNSIGGAAVWCIGFQKMQGQGVTILGDLVLKDKIVVYDLAGQRIGWANYDCSLSVNVSATTGTGRSEYVNPGEIGGSTSLRDGLKLTKTGFLAFFVHLSLICCFVFL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00607 490 Gene3D Acid Proteases 49 261 IPR021109 -
Rops7g00607 490 Pfam Xylanase inhibitor N-terminal 75 260 IPR032861 -
Rops7g00607 490 SUPERFAMILY Acid proteases 70 437 IPR021109 -
Rops7g00607 490 CDD pepsin_A_like_plant 75 434 IPR034161 -
Rops7g00607 490 FunFam Aspartic proteinase-like protein 2 262 441 - -
Rops7g00607 490 FunFam Aspartic proteinase-like protein 2 58 261 - -
Rops7g00607 490 Pfam Xylanase inhibitor C-terminal 278 430 IPR032799 -
Rops7g00607 490 Gene3D Acid Proteases 262 441 IPR021109 -
Rops7g00607 490 PANTHER ASPARTYL PROTEASES 14 428 IPR001461 GO:0004190|GO:0006508
Rops7g00607 490 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Rops7g00607 490 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Rops7g00607 490 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Rops7g00607 490 ProSiteProfiles Peptidase family A1 domain profile. 75 430 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00607 Rops-Chr7 7794730 7799500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00607 49 435 Miscellaneous Gene Families AT1G44130 26.866 4.74e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00607 - - gmx:100791299 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00607 7 7794730 7799500 Rops7g00607 7 7794730 7799500 ECH
Rops7g00607 7 7794730 7799500 Rops3g01033 3 13427608 13433374 PCT