Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01033 ATGGTGGCCGCCGCTATTTTATTCTCCGTCACGCTGCTGTTGGCGGTTTCTGGGTCTCCGGTGACGCTGACGTTGGAAAGAGCATTCCCTTCGAATCATGGAGTGGAGCTGAGTCAGCTCAGAGCAAGGGACAGTGTCAGACATCGTAGAATGTTGCAGTCTAGTACTAGCTACGTTGTTGATTTCCCTGTTAAAGGAACCTTCGATCCCTCACAAGTCGGGCTTTACTTTACAAAGGTGAAACTGGGTACTCCTCCAAGGGAATTTTATGTGCAAATTGACACTGGAAGTGATGTTCTCTGGGTTAGTTGTGGTTCTTGCAATGGTTGTCCTCAGACAAGTGGACTACAAATTCAGCTCAATTACTTTGAACCTAGGAGTTCATCCACATCTTCATTGATCTCTTGTTCAGACCAAAGGTGCAGGAGTGGAGCACAGTCATCAGATACTAGCTGCTCCAATCAGAACAACCAATGCATTTACACATTCCAGTATGGAGATGGTAGTGGGACATCAGGCTATTATGTTTCAGATTTGATGCATTTTGCCAGTATCTCTGAGGGATCCCTGCTGACAAATTCTTCGGCGCCCGTAGTTTTTGGCTGTAGCAACTACCAGACTGGGGACTTGACAAAGTCTGATAGAGCCATTGATGGGATATTTGGATTTGGGCAACAGGGCATGTCTGTCATCTCTCAGCTCTCCTCGGAAGGAGTAGCGCCAAAAGTGTTCTCCCATTGCCTGAAAGGAGATAGTAGTGGCGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAATTTATAGTCCACTTGTTCCATCACAGCCCCATTACAATTTAAATCTGCAGAGCATCTCTGTCAATGGCCAAATTTTGCCAATTGATTCTGCTGTTTTTGCTACATCAAACAACAGAGGTACCATTATTGATTCCGGGACAACTTTGGCTTACCTTGCAGAAGAGGCCTACAATCCCTTTGTCAATGCGATTACAGCTGCTATTCCACAATCTGTACGCACTGTTCTTTCCAGGGGAAATCAGTGTTACTTAATAACCACCAGCAATGTTGATATTTTTCCTCAACTAAGTCTGAACTTTGCTGGTGGTGCATCTCTGGTTTTAAGACCCAAAGACTACCTTATACAGCAGAATTATATTGGTGATGGATCAGTGTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAACCTGTAACAATTCTAGGAGACCTTGTATTAAAAGACAAAATTTTTGTCTATGATCTTGCCAGTCAACGCATTGGATGGGCTAACTATGACTGTTCATTGTCGGTTAATGTCTCAGCATCAACCGGTATGGGCAGAAGTGAATTTGTCAGTGCAGGAGAGCTAAGTGGCAGCACTTCTTTACATGATGGACCTCTCAAGTTGATAAAGATAGGGGTCCTTGCTCTCTTCATGCACATAGTACTGATATGTTTCTTTGTATATTGGTAG 1479 0.4415 MVAAAILFSVTLLLAVSGSPVTLTLERAFPSNHGVELSQLRARDSVRHRRMLQSSTSYVVDFPVKGTFDPSQVGLYFTKVKLGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFEPRSSSTSSLISCSDQRCRSGAQSSDTSCSNQNNQCIYTFQYGDGSGTSGYYVSDLMHFASISEGSLLTNSSAPVVFGCSNYQTGDLTKSDRAIDGIFGFGQQGMSVISQLSSEGVAPKVFSHCLKGDSSGGGILVLGEIVEPNIIYSPLVPSQPHYNLNLQSISVNGQILPIDSAVFATSNNRGTIIDSGTTLAYLAEEAYNPFVNAITAAIPQSVRTVLSRGNQCYLITTSNVDIFPQLSLNFAGGASLVLRPKDYLIQQNYIGDGSVWCIGFQKIQGQPVTILGDLVLKDKIFVYDLASQRIGWANYDCSLSVNVSASTGMGRSEFVSAGELSGSTSLHDGPLKLIKIGVLALFMHIVLICFFVYW* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01033 492 FunFam Aspartic proteinase-like protein 2 59 262 - -
Rops3g01033 492 Pfam Xylanase inhibitor C-terminal 279 431 IPR032799 -
Rops3g01033 492 Gene3D Acid Proteases 48 262 IPR021109 -
Rops3g01033 492 Gene3D Acid Proteases 263 442 IPR021109 -
Rops3g01033 492 Pfam Xylanase inhibitor N-terminal 76 261 IPR032861 -
Rops3g01033 492 PRINTS Pepsin (A1) aspartic protease family signature 407 422 IPR001461 GO:0004190|GO:0006508
Rops3g01033 492 PRINTS Pepsin (A1) aspartic protease family signature 82 102 IPR001461 GO:0004190|GO:0006508
Rops3g01033 492 PRINTS Pepsin (A1) aspartic protease family signature 309 320 IPR001461 GO:0004190|GO:0006508
Rops3g01033 492 PANTHER ASPARTYL PROTEASES 17 429 IPR001461 GO:0004190|GO:0006508
Rops3g01033 492 SUPERFAMILY Acid proteases 73 438 IPR021109 -
Rops3g01033 492 FunFam Aspartic proteinase-like protein 2 263 442 - -
Rops3g01033 492 ProSiteProfiles Peptidase family A1 domain profile. 76 431 IPR033121 -
Rops3g01033 492 CDD pepsin_A_like_plant 76 435 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01033 Rops-Chr3 13427608 13433374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01033 49 436 Miscellaneous Gene Families AT1G44130 27.586 1.91e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01033 - - gmx:100789004 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00607 7 7794730 7799500 Rops3g01033 3 13427608 13433374 PCT