Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00424 ATGTCTGCCACAACAAAATGCTTTTCCTCCAAAACCCACCCAGGTCCAGTGTCCAAAGCTGGTGTCTCTGTGAGGAGTAAGAGGGCCAAAAAAAGTGTACAACTTGAAGAAAAGAAGCATGAAGACCAAAAAGTGAGACTTTCATCACCTGCCCATTGGGAAAAGGTGCTTGAAGGAATTCGCAAAATGATGTATTCTGCAGATGACACTACGGAATGTGACAAAGATAATGATACTCTACCTCCTAAGGAAGCAAGATTTGCTGTCTTGGCATCTTCCCTTTTATCCAGCCAAACTAAGGAGCATGTTACTCGTGGAGCAACTCAACGTCTTCGTGAAAATGGTCTGCTTACTGCTGATGCAATCAACAAAGCTGATGAAGAAACCATCAAAAAATTGATTTACCCTGTTGGATTTTATACAAGAAAAGCCAGTAACTTGAAGAAAATTGCACATATTTGTCTCATGAGGTATGATGGAGATATACCTAGCTCAATTGAGGAGCTACTCTTACTTCCAGGCGTAGGTCCTAAGATTGCTCATTTGGTTATGATTATTGGATGGAACAACGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGGCTTGGATGGGTTTCAAGATCAGGCACAAAACAGAAAACTTTGACACCGGAAGAAACAAGAGTGGCGCTGCAACGGTGGCTTCCAAGGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGAAGGACAATATGTACTCCTCTTAGACCTCACTGTGAAGAGTGTAGTGTAAGTGATTTCTGCCCATCAGCGTTCAAGGAGACTACAAGCCCATCTTCTAAGTCCAATAAGTCTGGACTGAACAAGAAGCCTTAA 879 0.4243 MSATTKCFSSKTHPGPVSKAGVSVRSKRAKKSVQLEEKKHEDQKVRLSSPAHWEKVLEGIRKMMYSADDTTECDKDNDTLPPKEARFAVLASSLLSSQTKEHVTRGATQRLRENGLLTADAINKADEETIKKLIYPVGFYTRKASNLKKIAHICLMRYDGDIPSSIEELLLLPGVGPKIAHLVMIIGWNNVQGICVDTHVHRICNRLGWVSRSGTKQKTLTPEETRVALQRWLPREEWVPINPLLVGFGRTICTPLRPHCEECSVSDFCPSAFKETTSPSSKSNKSGLNKKP* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00424 292 Pfam HhH-GPD superfamily base excision DNA repair protein 92 219 IPR003265 GO:0006284
Rops7g00424 292 CDD ENDO3c 87 249 IPR003265 GO:0006284
Rops7g00424 292 MobiDBLite consensus disorder prediction 29 45 - -
Rops7g00424 292 ProSitePatterns Endonuclease III family signature. 160 189 IPR004036 -
Rops7g00424 292 Gene3D Hypothetical protein; domain 2 76 186 - -
Rops7g00424 292 Pfam Iron-sulfur binding domain of endonuclease III 253 269 IPR003651 GO:0051539
Rops7g00424 292 Hamap Endonuclease III-like protein 1 [NTHL1]. 49 275 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Rops7g00424 292 SMART endo3end 95 251 IPR003265 GO:0006284
Rops7g00424 292 Pfam Helix-hairpin-helix motif 157 184 IPR000445 GO:0003677
Rops7g00424 292 Gene3D - 187 275 IPR023170 -
Rops7g00424 292 MobiDBLite consensus disorder prediction 273 292 - -
Rops7g00424 292 FunFam Endonuclease III homolog 185 275 - -
Rops7g00424 292 SMART ccc3 252 272 IPR003651 GO:0051539
Rops7g00424 292 SUPERFAMILY DNA-glycosylase 81 278 IPR011257 GO:0003824|GO:0006281
Rops7g00424 292 MobiDBLite consensus disorder prediction 1 45 - -
Rops7g00424 292 FunFam Endonuclease III-like protein 1 82 186 - -
Rops7g00424 292 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 27 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00424 Rops-Chr7 5295944 5299454 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00424 K10773 - gmx:100805799 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00424 7 5295944 5299454 Rops7g00424 7 5295944 5299454 ECH
Rops7g00424 7 5295944 5299454 Rops3g00681 3 8317979 8323192 PCT