Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00681 ATGTTGGTCGTTCCAATTTCTCCTCGTTCGTTTGGTTTGGGGAGAATCAAAGTGCTGATCATGTCTGATACAACACCATGCTTTTCCAAAGCCCCGAACTCCATTACCAACACACCCACTTCCTCTAATGGCGCTTCAGTGTCCCAAGTTCGTGTCTTTGTGAGGAGAAATAAGAGAGCCAAAGGAATGACCATGAGTCTTCAAGAAAAGGAGCATCTACCCCCAACCCAGGTCCACAAATTTCCCCGTACACAGAAGTCCGGTCTACCTGACATTGAAGACTTTGCTTACAGAGGAGCAAATAAATTGACTCAGTGTAGAAAATCAGAAATGGGCTCAGATGTGACTCCAGCGAAAAGTGAAGTTGCTTCTCCATCACCCAGCAGTGAATCAGCTGCCCACTGGGAAAAGATGCTTGAGGGGATCCGCAAAATGAGGTGTTCTGCAGATGCCCCAGTGGACACTATGGGATGTGGAAGGGCCAGTGATACTCTACCTCCTAAGGAAAGAAGATTTGCTATCCTGATATCTGCTCTTTTATCAAGTCAAACCAAGGATCATGTTAATCATGGTGCAATCCAACGTCTTCTTCAAAATGGTCTGCTTACTGCTGAGGCAATCAACAATGCTGATGAGGAAACCATCAAAAAGTTGATTTACCCTGTTGGGTTTTATACAAGAAAAGCCACTAACGTGAAAAAAATTGCAAAAATTTGTCTCATGAAGTATGATGGGGACATACCTAGCACAATTGAGCAACTACTTTTACTTCCAGGCATAGGTCCTAAGATGGCTCATTTGGTTATGAATGCTGGATGGAACAATGTCCAAGGGATATGTGTGGATACTCATGTCCACCGCATTTGCAATCGGCTTGGGTGGGTGTCAAGATTGGGCACAAAACAGAAAACTTTGACACCTGAAGAGACAAGAGAGTCACTGCAACGGTGGCTTCCTAGGGAAGAATGGGATCCCATAAATCCTCTGTTGGTAGGATTTGGACAGACAATTTGTACACCTCTTAGACCTCGTTGTGGAGAATGTGGTATAAATGATATATGCCCATCAGCATTCAAGGAGACCTCAAATTCAAGCTCATCATCTTCCAAGTCCAGAAAGTCCACACCCAAAAAGAAGCTTTAA 1143 0.4409 MLVVPISPRSFGLGRIKVLIMSDTTPCFSKAPNSITNTPTSSNGASVSQVRVFVRRNKRAKGMTMSLQEKEHLPPTQVHKFPRTQKSGLPDIEDFAYRGANKLTQCRKSEMGSDVTPAKSEVASPSPSSESAAHWEKMLEGIRKMRCSADAPVDTMGCGRASDTLPPKERRFAILISALLSSQTKDHVNHGAIQRLLQNGLLTAEAINNADEETIKKLIYPVGFYTRKATNVKKIAKICLMKYDGDIPSTIEQLLLLPGIGPKMAHLVMNAGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTLTPEETRESLQRWLPREEWDPINPLLVGFGQTICTPLRPRCGECGINDICPSAFKETSNSSSSSSKSRKSTPKKKL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00681 380 FunFam Endonuclease III homolog 270 360 - -
Rops3g00681 380 ProSitePatterns Endonuclease III family signature. 245 274 IPR004036 -
Rops3g00681 380 CDD ENDO3c 172 334 IPR003265 GO:0006284
Rops3g00681 380 Hamap Endonuclease III-like protein 1 [NTHL1]. 131 360 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Rops3g00681 380 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 338 354 IPR004035 -
Rops3g00681 380 Pfam HhH-GPD superfamily base excision DNA repair protein 176 305 IPR003265 GO:0006284
Rops3g00681 380 FunFam Endonuclease III-like protein 1 167 271 - -
Rops3g00681 380 SMART endo3end 180 336 IPR003265 GO:0006284
Rops3g00681 380 MobiDBLite consensus disorder prediction 108 132 - -
Rops3g00681 380 SMART ccc3 337 357 IPR003651 GO:0051539
Rops3g00681 380 MobiDBLite consensus disorder prediction 358 380 - -
Rops3g00681 380 Gene3D - 269 360 IPR023170 -
Rops3g00681 380 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 63 373 - -
Rops3g00681 380 Pfam Iron-sulfur binding domain of endonuclease III 338 354 IPR003651 GO:0051539
Rops3g00681 380 Pfam Helix-hairpin-helix motif 242 270 IPR000445 GO:0003677
Rops3g00681 380 Gene3D Hypothetical protein; domain 2 165 268 - -
Rops3g00681 380 SUPERFAMILY DNA-glycosylase 142 361 IPR011257 GO:0003824|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00681 Rops-Chr3 8317979 8323192 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00681 K10773 - gmx:100818398 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00424 7 5295944 5299454 Rops3g00681 3 8317979 8323192 PCT