Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00420 ATGCCAACTATTTTGCTTAGGATTTTCCTTCTTTACCGCCTTCTAAATTCATTTCTCCTTTGCCTGGTCCCAAAGAAGCTTAGACCCTTCCTCCCCCCTTCTTGGTTACCCCATCAAACCAATCTCATTGAAACCACCACTTCTTCATCTTCATCTTCATCATCAAGGGGCCTTATTATTACCAACAGAATAATAATGGATCCCAATGAGCTCAAACGTGTTTTCCAAATGTTTGATCGTAATGGGGATGGTAGAATCACCAAGAAAGAGCTAAACGATTCGTTGGAGAACCTGGGAATTTTCATCCCTGACAAGGAGCTGACACAGATGATAGAGAGGATCGATGTTAATGGAGATGGGTGTGTGGACATTGATGAATTTGGTGAGTTGTATCAGTCCATCATGGATGAACGTGATGAAGAGGAGGATATGAGGGAGGCATTCAACGTCTTTGACCAAAATGGGGATGGATTCATAACCGTTGAAGAGTTGAGATCGGTCTTGGCTTCATTGGGTCTCAAACAAGGAAGAACGGTTGAAGATTGCAAGAAGATGATAAAGAAGGTGGATGTAGATGGAGATGGGATGGTGGATTACAAGGAGTTCAAGCAAATGATGAAAGGTGGTGGCTTTAGTGCTCTCACTTAA 648 0.4259 MPTILLRIFLLYRLLNSFLLCLVPKKLRPFLPPSWLPHQTNLIETTTSSSSSSSSRGLIITNRIIMDPNELKRVFQMFDRNGDGRITKKELNDSLENLGIFIPDKELTQMIERIDVNGDGCVDIDEFGELYQSIMDERDEEEDMREAFNVFDQNGDGFITVEELRSVLASLGLKQGRTVEDCKKMIKKVDVDGDGMVDYKEFKQMMKGGGFSALT* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00420 215 ProSiteProfiles EF-hand calcium-binding domain profile. 177 212 IPR002048 GO:0005509
Rops7g00420 215 ProSitePatterns EF-hand calcium-binding domain. 190 202 IPR018247 -
Rops7g00420 215 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Rops7g00420 215 SUPERFAMILY EF-hand 69 209 IPR011992 -
Rops7g00420 215 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Rops7g00420 215 FunFam calmodulin-like protein 3 141 210 - -
Rops7g00420 215 FunFam Calmodulin-like protein 5 47 140 - -
Rops7g00420 215 CDD EFh 147 207 IPR002048 GO:0005509
Rops7g00420 215 SMART efh_1 181 209 IPR002048 GO:0005509
Rops7g00420 215 SMART efh_1 70 98 IPR002048 GO:0005509
Rops7g00420 215 SMART efh_1 106 134 IPR002048 GO:0005509
Rops7g00420 215 SMART efh_1 143 171 IPR002048 GO:0005509
Rops7g00420 215 Gene3D - 134 209 - -
Rops7g00420 215 CDD EFh 70 127 IPR002048 GO:0005509
Rops7g00420 215 ProSitePatterns EF-hand calcium-binding domain. 152 164 IPR018247 -
Rops7g00420 215 Pfam EF-hand domain pair 70 132 IPR002048 GO:0005509
Rops7g00420 215 Pfam EF-hand domain pair 141 207 IPR002048 GO:0005509
Rops7g00420 215 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 141 207 - -
Rops7g00420 215 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Rops7g00420 215 Gene3D - 44 133 - -
Rops7g00420 215 ProSiteProfiles EF-hand calcium-binding domain profile. 139 174 IPR002048 GO:0005509
Rops7g00420 215 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00420 Rops-Chr7 5260112 5261165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00420 5 213 EF-hand Containing Proteins AT2G43290 68.203 3.09e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00420 K13448 - gmx:100527487 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00420 7 5260112 5261165 Rops7g00420 7 5260112 5261165 ECH
Rops7g00420 7 5260112 5261165 Rops3g00669 3 8153158 8154065 PCT