Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00669 ATGGATCCGAATGAGCTAAAGCGCATTTTTCAAATGTTTGATCAGAACGGAGATGGAAGAATCAGCAAGAAGGAGCTAACAGAGTCTTTGGAGAAATTGGACATGTTCATCTCAGACAAGGAGTTAACACAAATGATTGAGAAGATCGATGTGAATGGAGATGGTTGTGTGGACTTGGATGAATTTGGTGAGTTATATGAATCAATAATGGAGGAGCGTGATGAAGAGGAAGACATGAAGGAGGCATTCAACGTGTTTGACAAGAATCGTGATGGCTTCATCAGTGTTGAGGAACTAAGAGTGGTTATGTCCTCTTTGGGACTCAAACAAGGAAGAACTGTGGAAGAATGCAAGAAGATGATCATGAAGGTTGATGGTGATGGTGATGGAATGGTTGACTACAAAGAATTCAAGCAAATGATGAAAGGGGGAGGCTTCACTGCTCTTGGTTAA 453 0.4128 MDPNELKRIFQMFDQNGDGRISKKELTESLEKLDMFISDKELTQMIEKIDVNGDGCVDLDEFGELYESIMEERDEEEDMKEAFNVFDKNRDGFISVEELRVVMSSLGLKQGRTVEECKKMIMKVDGDGDGMVDYKEFKQMMKGGGFTALG* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00669 150 PRINTS Parvalbumin signature 87 103 - -
Rops3g00669 150 PRINTS Parvalbumin signature 65 83 - -
Rops3g00669 150 PRINTS Parvalbumin signature 124 137 - -
Rops3g00669 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Rops3g00669 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Rops3g00669 150 FunFam Calmodulin 1 2 143 - -
Rops3g00669 150 Gene3D - 2 69 - -
Rops3g00669 150 Gene3D - 70 144 - -
Rops3g00669 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Rops3g00669 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Rops3g00669 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Rops3g00669 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Rops3g00669 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Rops3g00669 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Rops3g00669 150 SMART efh_1 116 144 IPR002048 GO:0005509
Rops3g00669 150 SMART efh_1 78 106 IPR002048 GO:0005509
Rops3g00669 150 SMART efh_1 5 33 IPR002048 GO:0005509
Rops3g00669 150 SMART efh_1 41 69 IPR002048 GO:0005509
Rops3g00669 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 76 142 - -
Rops3g00669 150 CDD EFh 82 142 IPR002048 GO:0005509
Rops3g00669 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Rops3g00669 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Rops3g00669 150 SUPERFAMILY EF-hand 4 143 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00669 Rops-Chr3 8153158 8154065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00669 1 149 EF-hand Containing Proteins AT1G05990 74.000 2.67e-73 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00669 K13448 - csv:101210877 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00420 7 5260112 5261165 Rops3g00669 3 8153158 8154065 PCT