Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00389 ATGATGAGGATGGGAAACAAGTTACTTAGCATTCTTGTAATAGGACTCACTATGGCCTTTGTTATGTTGATGATGGTGCCCCAAAATGTGAGTGCTCAAAATTGTGGGTGTGCGGAAGGGTTATGTTGCAGCCAATACGGGTATTGTGGGAATGGTGAAGCCTACTGTGGTACAGGGTGCCGACAGAGTCCTTGTTATGAGAGCCAAAGTCCACCCAATAACGATGTTAATGTGGCTGACATAGTCACACAAGAATTCTTCAATGGTATAATTGGTCAGGCTGACTCTGGTTGTGCAGGGAAGAACTTCTACTCACGTGCTGCTTTTCTTGATGCTCTCAATTCCTACAATCAATTTGGTAGGATTGGTTCAGTGGATGACTCCAAGCGCGAGATTGCGGCTGCTTTTGCCCATTTCACACATGAAACTGGACCAGGAAAGAGCAATGGTTTTGATGGATTGAACTCTCCTGAAACAGTGGCCAATGATCCTGTGGTGTCTTTCAAGACAGCATTATGGTACTGGATGCAGCATGTGCGCCCTGTCATCAACCAAGGCTTTGGTGCAACCATTAGAGCTATTAATGGTCGACTTGAATGTGATGGTGCAAACCCCTCCACAGTTCAGGCTCGTATTAATTACTACACTGAATACTGTAGACAATTGGGTGTTGCTACTGGTGATAATCTTACTTGCTAA 699 0.4478 MMRMGNKLLSILVIGLTMAFVMLMMVPQNVSAQNCGCAEGLCCSQYGYCGNGEAYCGTGCRQSPCYESQSPPNNDVNVADIVTQEFFNGIIGQADSGCAGKNFYSRAAFLDALNSYNQFGRIGSVDDSKREIAAAFAHFTHETGPGKSNGFDGLNSPETVANDPVVSFKTALWYWMQHVRPVINQGFGATIRAINGRLECDGANPSTVQARINYYTEYCRQLGVATGDNLTC* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00389 232 Gene3D - 29 65 IPR036861 GO:0008061
Rops7g00389 232 ProSitePatterns Chitinases family 19 signature 1. 98 120 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops7g00389 232 FunFam Endochitinase EP3 77 232 - -
Rops7g00389 232 SUPERFAMILY Lysozyme-like 77 232 IPR023346 -
Rops7g00389 232 CDD ChtBD1 37 65 - -
Rops7g00389 232 PANTHER CHITINASE-RELATED 16 144 - -
Rops7g00389 232 SMART ChitinBD_3 34 65 IPR001002 GO:0008061
Rops7g00389 232 ProSitePatterns Chitinases family 19 signature 2. 166 176 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops7g00389 232 Pfam Chitinase class I 185 232 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops7g00389 232 Pfam Chitinase class I 81 153 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops7g00389 232 CDD chitinase_GH19 82 232 - -
Rops7g00389 232 Pfam Chitin recognition protein 32 65 IPR001002 GO:0008061
Rops7g00389 232 Gene3D - 66 232 - -
Rops7g00389 232 SUPERFAMILY Plant lectins/antimicrobial peptides 30 69 IPR036861 GO:0008061
Rops7g00389 232 PIRSF Endochitinase 145 232 IPR016283 GO:0004568|GO:0005975
Rops7g00389 232 PIRSF Endochitinase 2 150 IPR016283 GO:0004568|GO:0005975
Rops7g00389 232 ProSitePatterns Chitin recognition or binding domain signature. 37 56 IPR018371 GO:0008061
Rops7g00389 232 PRINTS Chitin-binding domain signature 50 57 IPR001002 GO:0008061
Rops7g00389 232 PRINTS Chitin-binding domain signature 43 50 IPR001002 GO:0008061
Rops7g00389 232 PRINTS Chitin-binding domain signature 35 43 IPR001002 GO:0008061
Rops7g00389 232 ProSiteProfiles Chitin-binding type-1 domain profile. 32 67 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00389 Rops-Chr7 5002874 5004430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00389 14 232 Glycoside Hydrolase AT3G54420 55.639 2.34e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00389 K01183 - gmx:100776582 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00389 7 5002874 5004430 Rops7g00389 7 5002874 5004430 ECH
Rops7g00389 7 5002874 5004430 Rops3g00631 3 7797662 7812556 PCT