Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00631 ATGAGGAAGGGGAACATGTTACAAAACATTAGTGTCATAGCAATGGCAAGTGCCTTTGTGTTGATGATGATGGTGCCAAAATATGTGAGTGCTCAAAACTGCGGGTGTGAATCTAGTTTATGTTGCAGCCAATATGGTTATTGTGGGAACGGTGATGACTACTGTGGCAAAGGATGCCAACAGGGTCCTTGTTATGCAAGTGCCCCACCCAACGATGCTAATGTAGCTGATATTGTCACACCTGAATTCTTCAATTCCATAATTGATCAAGCTGATTCTAGTTGTGCAGGGAAGAACTTTTATTCAAGAGATGCTTTCCTCAATGCTCTCAATTCCTACAACCAATTTGGTAGAATTGGTTCTGTTGATGACTCTAAGCGTGAGATTGCAGCTGCTTTTGCCCATTTCACTCATGAAACTGGACATTTTTGTTACATAGAAGAGATTGATGGTGCATCAAAGGACTATTGTGATGAAACCAACACTCAGTACCCGTGTGCCCCTAACAAAGGCTACTATGGGCGTGGACCTATTCAACTATCATGGAACTTCAACTATGGACCAGCAGGGCAGAGTAACAATTTTGATGGATTGAATGCTCCAGAGACTGTGGCTAATGACCCTGTGGTGTCATTCAAGACTGCTTTGTGGTATTGGATGGAAAATGTGAGGCCTGTTATCAACCAGGGCTTTGCTGCAACCATTAGAGCTATCAATGGCCAACTTGAATGTGATGGTGCTAACCAAGACACTGTTCAGGCTCGTGTTAATTACTATACCCAATATTGTTCACAACTTGGTGTTGATCCTGGTGATAATCTTACTTGCTGA 831 0.426 MRKGNMLQNISVIAMASAFVLMMMVPKYVSAQNCGCESSLCCSQYGYCGNGDDYCGKGCQQGPCYASAPPNDANVADIVTPEFFNSIIDQADSSCAGKNFYSRDAFLNALNSYNQFGRIGSVDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDETNTQYPCAPNKGYYGRGPIQLSWNFNYGPAGQSNNFDGLNAPETVANDPVVSFKTALWYWMENVRPVINQGFAATIRAINGQLECDGANQDTVQARVNYYTQYCSQLGVDPGDNLTC* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00631 276 Gene3D Endochitinase, domain 2 147 204 - -
Rops3g00631 276 ProSiteProfiles Chitin-binding type-1 domain profile. 31 66 IPR001002 GO:0008061
Rops3g00631 276 PANTHER CHITINASE-RELATED 14 276 - -
Rops3g00631 276 FunFam Endochitinase (Chitinase) 147 206 - -
Rops3g00631 276 ProSitePatterns Chitinases family 19 signature 1. 95 117 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops3g00631 276 Gene3D - 75 276 - -
Rops3g00631 276 PIRSF Endochitinase 3 276 IPR016283 GO:0004568|GO:0005975
Rops3g00631 276 FunFam Class IV chitinase 28 76 - -
Rops3g00631 276 Pfam Chitin recognition protein 32 64 IPR001002 GO:0008061
Rops3g00631 276 SMART ChitinBD_3 33 64 IPR001002 GO:0008061
Rops3g00631 276 FunFam Endochitinase PR4 68 155 - -
Rops3g00631 276 ProSitePatterns Chitinases family 19 signature 2. 210 220 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops3g00631 276 CDD chitinase_GH19 79 276 - -
Rops3g00631 276 Pfam Chitinase class I 78 223 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops3g00631 276 Pfam Chitinase class I 230 276 IPR000726 GO:0004568|GO:0006032|GO:0016998
Rops3g00631 276 SUPERFAMILY Lysozyme-like 74 276 IPR023346 -
Rops3g00631 276 Gene3D - 29 74 IPR036861 GO:0008061
Rops3g00631 276 CDD ChtBD1 36 60 - -
Rops3g00631 276 PRINTS Chitin-binding domain signature 42 49 IPR001002 GO:0008061
Rops3g00631 276 PRINTS Chitin-binding domain signature 49 56 IPR001002 GO:0008061
Rops3g00631 276 PRINTS Chitin-binding domain signature 34 42 IPR001002 GO:0008061
Rops3g00631 276 ProSitePatterns Chitin recognition or binding domain signature. 36 55 IPR018371 GO:0008061
Rops3g00631 276 SUPERFAMILY Plant lectins/antimicrobial peptides 30 69 IPR036861 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00631 Rops-Chr3 7797662 7812556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00631 13 276 Glycoside Hydrolase AT3G54420 73.485 1.09e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00631 K01183 - gmx:100776582 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00631 3 7797662 7812556 Rops3g00631 3 7797662 7812556 ECH
Rops7g00389 7 5002874 5004430 Rops3g00631 3 7797662 7812556 PCT