Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g00340 ATGGCATCAGTTGGTGCAGTCAAATTCTTGCTGTCCTTACTTCTATGGCTCCTCAACTCTCTCTCTCTTTCTCAAGGTAAGCAGCAGAACTGGAATGCATATCGCTACCCTTTTATCAAAAAAGCAAGTTCATTCTCATCTTCCACCATCAATAATGGCTATGACTACATAATAGTGGGAGGTGGCACAGCAGGGTGTCCTTTGGCGGCAACCCTTTCTCAAAAATTCAATGTTCTGTTGCTAGAAAGAGGAGGAGTGCCCTTCACCAACCCCAATGTGTCCTTTCTAGAGAACTTCCACATTACTTTGGCAGATACTTCACCAACTTCAGCTTCACAGTGTTTCATTTCAACAGATGGAGTCCTCAATGCAAGGGGAAGGGTTTTGGGTGGTGGCAGTTCCATTAATGCTGGCTTCTACACTAGAGCAAGCCAAAGATATATACAGAAGGTGGGGTGGGATGCCAAGCTAGTTAATGAGTCTTATCCTTGGGTTGAGAGGCAGATTGTTCACCGCCCAAAATTTTCACCTTGGCAAAGAGCAGTGAGGGACAGTCTTCTTGATGCTGGTGTGTCTCCTTTTAATGGATTCACCTATGATCATAAGTATGGAACCAAATTTGGTGGAACCATTTTTGACAGATTTGGGCGCCGCCACACAGCTGCTGAGCTACTTGCTTCTGGGAACCCTGACAAACTCACTGTTTTGATCTATGCCACTGTACAAAAGATCGTGTTTGATACAAGAGGAAAAAGGCCAAAAGCTATAGGGGTTATTTTCAAGGATGAACATGGAAAACAACATCAGGCAGTTCTGGGAAGTGATAGACAGAGTGAAGTGATTGTGTCCAGTGGGGCAATTGGGACCCCTCAAATGCTATTGCTCAGTGGAATTGGCCCAAAAGCAGAACTTCAGAACTTGAACATCACCGTGGTGCTTGACAACCCATTTGTTGGGAAGGGAATGGCTGATAACCCCATGAACACAATTTTCGTTCCTTCTAATAGACCAGTTCACCAGTCACTCATAGAAACTGTTGGTATCACCAAATTGGGTGTGTACATTGAGACTAGCTGTGGATTTGGGCAGTCCAACGAGAGCATTCACAGCCACCATGGTATGTTGTCAGCTGAGATTGGTCAACTCTCCACAATTCCTCCCAAACAAAGATCACAAGAAGCTGTTAAGGCTTTTGTCAAGAACAAGAAAGACTTGCCTGTTGAAGCATTCAGGGGAGGCTTCATCTTATCAAAAGTTGCCAATGCTTGGTCAACAGGTGAGCTCAAGTTGGTCAACAACAATGTGGATGACAACCCTGCTGTTACCTTCAACTACTTCAGTCACCCTTATGATCTTCAACGCTGTGTAGAGGGTATCCGCTTAGCAACTAAGGTTGTTCAATCAGAACACTTCACAAACTACACTTTGTGTGACAGACAAACCACAGAGAAACTGCTTAACCTCACTGTGAAGGCTAATGTCAACCTCATACCGAAGCATGTCAATGACACTAAATCATTAGAGCAGTTTTGCAAAGACACTGTGATCACTATTTGGCACTACCATGGTGGGTGCCATGTGGGGCAGGTAGTCAACCCTGATTATAAGGTTCTTGGTGTTGATAGACTCCGTGTGGTAGATGGCTCTACATTTACTGAGTCACCAGGAACCAATCCTCAAGCTACTGTGATGATGATGGGCAGGTACATGGGACTGAAGATTTTAAGAGAGAGGCTGGGGAAATTTGCTGGTATTTAA 1758 0.4454 MASVGAVKFLLSLLLWLLNSLSLSQGKQQNWNAYRYPFIKKASSFSSSTINNGYDYIIVGGGTAGCPLAATLSQKFNVLLLERGGVPFTNPNVSFLENFHITLADTSPTSASQCFISTDGVLNARGRVLGGGSSINAGFYTRASQRYIQKVGWDAKLVNESYPWVERQIVHRPKFSPWQRAVRDSLLDAGVSPFNGFTYDHKYGTKFGGTIFDRFGRRHTAAELLASGNPDKLTVLIYATVQKIVFDTRGKRPKAIGVIFKDEHGKQHQAVLGSDRQSEVIVSSGAIGTPQMLLLSGIGPKAELQNLNITVVLDNPFVGKGMADNPMNTIFVPSNRPVHQSLIETVGITKLGVYIETSCGFGQSNESIHSHHGMLSAEIGQLSTIPPKQRSQEAVKAFVKNKKDLPVEAFRGGFILSKVANAWSTGELKLVNNNVDDNPAVTFNYFSHPYDLQRCVEGIRLATKVVQSEHFTNYTLCDRQTTEKLLNLTVKANVNLIPKHVNDTKSLEQFCKDTVITIWHYHGGCHVGQVVNPDYKVLGVDRLRVVDGSTFTESPGTNPQATVMMMGRYMGLKILRERLGKFAGI* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g00340 585 ProSitePatterns GMC oxidoreductases signature 2. 285 299 IPR000172 GO:0016614|GO:0050660
Rops7g00340 585 SUPERFAMILY FAD/NAD(P)-binding domain 48 577 IPR036188 -
Rops7g00340 585 SUPERFAMILY FAD-linked reductases, C-terminal domain 322 524 - -
Rops7g00340 585 Pfam GMC oxidoreductase 424 568 IPR007867 GO:0016614
Rops7g00340 585 Gene3D - 54 567 IPR036188 -
Rops7g00340 585 PANTHER OSJNBA0019K04.7 PROTEIN 20 579 - -
Rops7g00340 585 Gene3D - 171 517 - -
Rops7g00340 585 PIRSF Alcohol_oxidase 33 583 IPR012132 GO:0050660
Rops7g00340 585 Pfam GMC oxidoreductase 54 326 IPR000172 GO:0016614|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g00340 Rops-Chr7 4468190 4475392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g00340 36 578 Miscellaneous Gene Families AT5G51950 52.007 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g00340 K15403 - gmx:100818122 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00340 7 4468190 4475392 Rops7g00340 7 4468190 4475392 ECH
Rops7g00340 7 4468190 4475392 Rops4g02002 4 46103581 46111202 PCT