Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02002 ATGGCAACAGTTGGTGCAGTCAAATTCTTCTTGTGCTTAATTCTATGGCTCTGGAACTTTCTACCTCCTTGTCAAGGTAGGCAGAACTGGCATGAAAATGGCTACCCTTTTATCAAAAAAGCAAGTTCATTCTCATCACCATCAATTTCAACTACCTCCCTCAATAATGCATATGACTACATAATAGTGGGAGGTGGCACTGCAGGGTGTCCTTTGGCTGCAACACTCTCTCAAAACTTCAGTGTTTTGTTGCTTGAAAGAGGGGGTGTTCCTTTCACCAACCCCAATGTTTCATTTCTATCAAACTTCCACATTACCTTAGCAGACACTTCACCAACTTCAGCTTCCCAATACTTCCTTTCAACAGATGGAGTTTTCAATGCAAGGGCAAGAGTTTTAGGTGGTGGCAGTTCCATCAATGCTGGTTTCTATACTAGAGCAAGCTCAAGGTTTATACAAAAGGTGGGGTGGGATGCCAAGATAGTAAATGAGTCTTACCCATGGGTTGAGAAGCAAATTGTTCACCGTCCAAAGTTTTCAGGTTATCAGAGAGCAGTGATGGACAGTCTTCTAGATTCTGGTGTGTCTCCTTTTAATGGTTTCACCTATGATCATATTTATGGAACCAAGCTCGGTGGAACCATTTTTGATAGATTTGGACGCCGCCACACAGCTGCTGAACTGCTTGCTTCTGGAAACCCTGACAGACTAACTGTTCTCATCCATGCCACTGTCCAAAAGATTGTTTTTGATACAAGAGGAAAAAGACCAAAAGCTGTGGGGGTTATTTTCAAGGATGAAAATGGAAAACAGCATGAGGCAATGCTGGTAAATGATAGGCAAAGTGAAGTGATAGTGTCTAGTGGGGCAATTGGGAGTCCTCAGTTGCTAATGCTTAGTGGAATTGGGCCAAAATCTGAACTCCAGAACTTGAACATCTCTGTGGTCCTTAACAACCCCTTTGTTGGGAAGGGAATGGTAGATAATCCCATGAACACAATTTTTGTTCCTCATGATAGGCCAGTTAATCAGTCTCTCATAGAAACTGTTGGTATCACCAAGTTGGGTGTGTACATTGAAGCCAGCAGTGGATTTAGTCAGTCCAACAATAGCATTCACTGCCACCATGGTATTGTGTCAGCTGAGATTGGACAGCTCTCCACAATTCCTCCCAAACAAAGATCAATAGAAGCTATTCAAGCTTTTATCAAGAACAAGAAAGACATACCTATTGAAGCATTCAAGGGAGGCTTTCTCTTGTCAAAAGTTGCCAATGCTTGGTCAGTAGGTGAGCTCAAGTTGATAAACACCAATGTGAATGACAACCCTGCTGTTACCTTCAACTACTTCAATCATCCATATGATCTTAAGCGCTGTGTTAAGGGAATCAGCTTGGCAATTAAGGTAGCTCAGTCACAACACTTAACAAACTACACTTTGTGTAAGAGACAAACCACAGAGAAACTGCTTAACCTTTCTGTGAAGACTAATGTCAACCTCAGACCAAAGCATGACAATGACACATCACTAGAGCAGTTCTGCAAAGACACTGTGATCACAATTTGGCACTACCATGGAGGGTGCCATGTGGGGAAGGTAGTTGACCCTGATTATAAGGTTCTTGGTGTTGATAGACTCCGTGTTGTAGATGGCTCAACATTTCCTGAATCACCAGGAACAAATCCTCAAGCCACTGTGATGATGATGGGCAGGTACATGGGAGTGAAGATTTTGAGAGATAGGTTGGGGAAATTGGCTGGTATATAA 1767 0.4256 MATVGAVKFFLCLILWLWNFLPPCQGRQNWHENGYPFIKKASSFSSPSISTTSLNNAYDYIIVGGGTAGCPLAATLSQNFSVLLLERGGVPFTNPNVSFLSNFHITLADTSPTSASQYFLSTDGVFNARARVLGGGSSINAGFYTRASSRFIQKVGWDAKIVNESYPWVEKQIVHRPKFSGYQRAVMDSLLDSGVSPFNGFTYDHIYGTKLGGTIFDRFGRRHTAAELLASGNPDRLTVLIHATVQKIVFDTRGKRPKAVGVIFKDENGKQHEAMLVNDRQSEVIVSSGAIGSPQLLMLSGIGPKSELQNLNISVVLNNPFVGKGMVDNPMNTIFVPHDRPVNQSLIETVGITKLGVYIEASSGFSQSNNSIHCHHGIVSAEIGQLSTIPPKQRSIEAIQAFIKNKKDIPIEAFKGGFLLSKVANAWSVGELKLINTNVNDNPAVTFNYFNHPYDLKRCVKGISLAIKVAQSQHLTNYTLCKRQTTEKLLNLSVKTNVNLRPKHDNDTSLEQFCKDTVITIWHYHGGCHVGKVVDPDYKVLGVDRLRVVDGSTFPESPGTNPQATVMMMGRYMGVKILRDRLGKLAGI* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02002 588 Gene3D - 58 570 IPR036188 -
Rops4g02002 588 Pfam GMC oxidoreductase 428 571 IPR007867 GO:0016614
Rops4g02002 588 Gene3D - 175 520 - -
Rops4g02002 588 Pfam GMC oxidoreductase 58 154 IPR000172 GO:0016614|GO:0050660
Rops4g02002 588 Pfam GMC oxidoreductase 218 330 IPR000172 GO:0016614|GO:0050660
Rops4g02002 588 SUPERFAMILY FAD/NAD(P)-binding domain 51 580 IPR036188 -
Rops4g02002 588 SUPERFAMILY FAD-linked reductases, C-terminal domain 326 527 - -
Rops4g02002 588 PIRSF Alcohol_oxidase 38 587 IPR012132 GO:0050660
Rops4g02002 588 ProSitePatterns GMC oxidoreductases signature 2. 289 303 IPR000172 GO:0016614|GO:0050660
Rops4g02002 588 PANTHER OSJNBA0019K04.7 PROTEIN 20 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02002 Rops-Chr4 46103581 46111202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02002 8 583 Miscellaneous Gene Families AT3G56060 49.570 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02002 K15403 - gmx:100788704 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00340 7 4468190 4475392 Rops4g02002 4 46103581 46111202 PCT